RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 NAXDQ8IW45 347 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 SLC5A11Q8WWX8 675 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 USP7Q93009 1102 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 C3orf30Q96M34 536 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 TUBB6Q9BUF5 446 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 LRRC61Q9BV99 259 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 AKTIPQ9H8T0 292 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 POT1Q9NUX5 634 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 RIC8BQ9NVN3 520 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 OR6C2Q9NZP2 312 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 SUSD2Q9UGT4 822 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 BTRCQ9Y297 605 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 KNL1Q8NG31 2342 aa12.99□□□□□ -0.33
VMP1-217ENST00000593168 ARHGEF17Q96PE2 2063 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 PCM1Q15154 2024 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 E7EQ34 232 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 E9PBE3 544 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 H0YIV9 168 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 KLHL41O60662 606 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 UBOX5O94941 541 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 CELA2BP08218 269 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 LINC00032P0C843 101 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 PRR35P0CG20 571 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 C1GALT1C1LP0DN25 315 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 LBPP18428 481 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 NCF2P19878 526 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 SHMT2P34897 504 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 UBE2IP63279 158 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 IRX1P78414 480 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 BNIP1Q12981 228 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 C1orf61Q13536 156 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 LAPTM5Q13571 262 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 TSTA3Q13630 321 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 ABRAXAS2Q15018 415 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 ZRSR2Q15696 482 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 CPSF6Q16630 551 aaKnown RBP eCLIP12.98□□□□□ -0.33
VMP1-217ENST00000593168 TCHHL1Q5QJ38 904 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 C10orf62Q5T681 223 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 THEMIS2Q5TEJ8 643 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 FAM219BQ5XKK7 198 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 OGFOD2Q6N063 350 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 IL27RAQ6UWB1 636 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 NXPE4Q6UWF7 544 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 Q6ZSR9 355 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 SLCO6A1Q86UG4 719 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 GKN2Q86XP6 184 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 MYLK4Q86YV6 388 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 RBM12BQ8IXT5 1001 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 CPSF7Q8N684 471 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 LMNTD1Q8N9Z9 388 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 LINC01555Q8NAE3 123 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 FAM46DQ8NEK8 389 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 NEIL2Q969S2 332 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 SH3KBP1Q96B97 665 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 PTCD3Q96EY7 689 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 BBC3Q96PG8 261 aaPredicted RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 EFCAB11Q9BUY7 163 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 CCDC106Q9BWC9 280 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 TWSG1Q9GZX9 223 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 ELOVL6Q9H5J4 265 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 ZNF385DQ9H6B1 395 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 CCDC86Q9H6F5 360 aaKnown RBP12.98□□□□□ -0.33
VMP1-217ENST00000593168 SLC40A1Q9NP59 571 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 ICKQ9UPZ9 632 aa12.98□□□□□ -0.33
VMP1-217ENST00000593168 PRAMEF33A0A0G2JMD5 474 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 ATP6AP2A0A1C7CYW4 349 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 A0A1W2PPV9 198 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 CAPN14A8MX76 684 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 NPIPB8E9PQR5 432 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 FFAR3O14843 346 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 SLC22A2O15244 555 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 GPR42O15529 346 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 CBFA2T3O75081 653 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 ATP6AP2O75787 350 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 ATP5HO75947 161 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 KIAA0754O94854 1291 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 VIPP01282 170 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 CD22P20273 847 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 HTR6P50406 440 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 GRIK2Q13002 908 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 TCEA2Q15560 299 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 SMU1Q2TAY7 513 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 PAGE2BQ5JRK9 111 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 FRG2Q64ET8 278 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 SCIMPQ6UWF3 145 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 TMPRSS11BQ86T26 416 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 AMIGO1Q86WK6 493 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 TRIM48Q8IWZ4 208 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 NAGSQ8N159 534 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 SFRP1Q8N474 314 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 C2orf73Q8N5S3 287 aaPredicted RBP12.97□□□□□ -0.33
VMP1-217ENST00000593168 AVL9Q8NBF6 648 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 ABHD11Q8NFV4 315 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 LMX1AQ8TE12 382 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 ZDHHC1Q8WTX9 485 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 SELENOMQ8WWX9 145 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 LCN9Q8WX39 176 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 TUBGCP3Q96CW5 907 aa12.97□□□□□ -0.33
VMP1-217ENST00000593168 PRR11Q96HE9 360 aaPredicted RBP12.97□□□□□ -0.33
VMP1-217ENST00000593168 FRG2BQ96QU4 278 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms