RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PPP1R21	Q6ZMI0	780 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	OTOA	Q7RTW8	1153 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	LDB1	Q86U70	411 aa	Predicted RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	CCDC170	Q8IYT3	715 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	AMER2	Q8N7J2	671 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	AMER3	Q8N944	861 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	CHTF18	Q8WVB6	975 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	METTL21A	Q8WXB1	218 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	ALG3	Q92685	438 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	RERG	Q96A58	199 aa	Predicted RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF354B	Q96LW1	612 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	GPR137	Q96N19	417 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	TMEM121	Q9BTD3	319 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	MRPS30	Q9NP92	439 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	UTP6	Q9NYH9	597 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPATA7	Q9P0W8	599 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	RUVBL1	Q9Y265	456 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	MEMO1	Q9Y316	297 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	PKDREJ	Q9NTG1	2253 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	HIVEP1	P15822	2718 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689		A0A0A6YYC8	382 aa	Predicted RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689		I3L1I5	382 aa	Predicted RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	TXNDC9	O14530	226 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	FOXS1	O43638	330 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	C8orf89	P0DMQ9	161 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	PKM	P14618	531 aa	Known RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	ALDH6A1	Q02252	535 aa	Known RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	TLE4	Q04727	773 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	TBX2	Q13207	712 aa	Predicted RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	SYT16	Q17RD7	645 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	HKDC1	Q2TB90	917 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	H3F3C	Q6NXT2	135 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	CDH24	Q86UP0	819 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	PEX13	Q92968	403 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	PANX2	Q96RD6	677 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	CYTH2	Q99418	400 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	DRC3	Q9H069	523 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	ETNK1	Q9HBU6	452 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	MCCC2	Q9HCC0	563 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	CATSPERZ	Q9NTU4	200 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	GNPTG	Q9UJJ9	305 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	RUVBL2	Q9Y230	463 aa	Known RBP	11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	TCAF1	Q9Y4C2	921 aa		11.99	□□□□□ -0.49
SHMT2-223	ENST00000556689	NPIPA5	E9PKD4	350 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	CD3EAP	O15446	510 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	SEC24D	O94855	1032 aa	Predicted RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	SUN1	O94901	812 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	STIP1	P31948	543 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	RPA3	P35244	121 aa	Predicted RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	CYLC1	P35663	651 aa	Predicted RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	CD96	P40200	585 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	GRIA1	P42261	906 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	FAM53B	Q14153	422 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	NDUFA9	Q16795	377 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	BTBD16	Q32M84	506 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	ANKRD20A4	Q4UJ75	823 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	ACER2	Q5QJU3	275 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	PLAG1	Q6DJT9	500 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	SUSD1	Q6UWL2	747 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	PAQR7	Q86WK9	346 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	LRRC6	Q86X45	466 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZC3H7A	Q8IWR0	971 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	BEST3	Q8N1M1	668 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	TXLNB	Q8N3L3	684 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	ARHGEF39	Q8N4T4	335 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	OR9A1P	Q8NGU1	263 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	SLC35B2	Q8TB61	432 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	SMPDL3A	Q92484	453 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	PDLIM2	Q96JY6	352 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	OR2A5	Q96R48	311 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	UTP23	Q9BRU9	249 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	P2RY12	Q9H244	342 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	KCNK13	Q9HB14	408 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	KLHL1	Q9NR64	748 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	NPIPA1	Q9UND3	350 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	DUSP10	Q9Y6W6	482 aa		11.98	□□□□□ -0.49
SHMT2-223	ENST00000556689	IGHV3-20	A0A0C4DH32	117 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	IGKV1-8	A0A0C4DH67	115 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	SOWAHD	A6NJG2	315 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689		E7EVH7	732 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	ASNA1	O43681	348 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	NDUFS3	O75489	264 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	MATN4	O95460	622 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	CD46	P15529	392 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	EEF1D	P29692	281 aa	Known RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	FDFT1	P37268	417 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	AVPR1B	P47901	424 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	EFNA3	P52797	238 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	MAT1A	Q00266	395 aa	Known RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	RELA	Q04206	551 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	PRDX1	Q06830	199 aa	Known RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	TSTA3	Q13630	321 aa	Predicted RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	TUBA3C	Q13748	450 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	ARHGAP19	Q14CB8	494 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	MEP1A	Q16819	746 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	FCRLB	Q6BAA4	426 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPINK14	Q6IE38	97 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms