RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NDUFA8P51970 172 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 EFNA3P52797 238 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 STX17P56962 302 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PPIAP62937 165 aaKnown RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 OCRLQ01968 901 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PRKG2Q13237 762 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PTK6Q13882 451 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 CAPRIN1Q14444 709 aaKnown RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 SIX1Q15475 284 aaPredicted RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 DPYSL2Q16555 572 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 IFI16Q16666 785 aaKnown RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 CA9Q16790 459 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 KCTD11Q693B1 232 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PPP1R2P3Q6NXS1 205 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 MILR1Q7Z6M3 343 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PHF13Q86YI8 300 aaPredicted RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 GPALPP1Q8IXQ4 340 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP54-211ENST00000474929 CYP4Z2PQ8N1L4 340 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP54-211ENST00000474929 OR5K2Q8NHB8 316 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 MMABQ96EY8 250 aaPredicted RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 NPAS2Q99743 824 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 RAB11FIP5Q9BXF6 653 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 DEFB127Q9H1M4 99 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 CDCP1Q9H5V8 836 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 SNRNP200O75643 2136 aaKnown RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 CR1P17927 2039 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 FAM170AA1A519 330 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 TXNDC9O14530 226 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 GAPDHSO14556 408 aaPredicted RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 TCF21O43680 179 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ERN1O75460 977 aaKnown RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 ALX3O95076 343 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 AP2A1O95782 977 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 HLA-DQB2P05538 268 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 PSMA2P25787 234 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 CEACAM8P31997 349 aaPredicted RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 CYLC1P35663 651 aaPredicted RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 CASP9P55211 416 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 PLOD1Q02809 727 aaPredicted RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 FOXO1Q12778 655 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 PTP4A2Q12974 167 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 BECN1Q14457 450 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 MINDY4Q4G0A6 757 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 MFSD4BQ5TF39 518 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 PAPD4Q6PIY7 484 aaKnown RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 FAM151BQ6UXP7 276 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 TRILQ7L0X0 811 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 DAAM2Q86T65 1068 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 NT5DC3Q86UY8 548 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ZC3H7AQ8IWR0 971 aaKnown RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 C3orf56Q8N813 242 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ZFAND2BQ8WV99 257 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 HSPH1Q92598 858 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 SMARCE1Q969G3 411 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ULK4Q96C45 1275 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 C10orf90Q96M02 699 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 TRIB3Q96RU7 358 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 VN1R1Q9GZP7 353 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 DRC3Q9H069 523 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 SIX2Q9NPC8 291 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ARMCX1Q9P291 453 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 ZC3H7BQ9UGR2 993 aaKnown RBP7.51□□□□□ -1.21
USP54-211ENST00000474929 RCOR1Q9UKL0 485 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 PCDHA3Q9Y5H8 950 aa7.51□□□□□ -1.21
USP54-211ENST00000474929 UBFD1O14562 309 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 LIN7AO14910 233 aaPredicted RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 DLX3O60479 287 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 NDST3O95803 873 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 IL18BPO95998 194 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PIRTP0C851 137 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PTPN3P26045 913 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PKLRP30613 574 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 AVPR1BP47901 424 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 CPA2P48052 419 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 MTTPP55157 894 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 MLF1P58340 268 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 ACTN3Q08043 901 aaPredicted RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 NIPAL4Q0D2K0 466 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 GALNT2Q10471 571 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 NDUFA9Q16795 377 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 FAM174BQ3ZCQ3 159 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 CCDC122Q5T0U0 273 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 RNF44Q7L0R7 432 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 ANKRD37Q7Z713 158 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PCGF5Q86SE9 256 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 TMEM156Q8N614 296 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 AMER3Q8N944 861 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 MAPK1IP1LQ8NDC0 245 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PHC3Q8NDX5 983 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 OR5AR1Q8NGP9 310 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 SLC30A5Q8TAD4 765 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 MCOLN3Q8TDD5 553 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 GTPBP3Q969Y2 492 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 LCORQ96JN0 433 aaPredicted RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 SPATA13Q96N96 652 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 TSGA13Q96PP4 275 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 CYTH2Q99418 400 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms