RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 GAPDHSO14556 408 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 DNTTP04053 509 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ENGP17813 658 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SDC1P18827 310 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 MAGEA11P43364 429 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 PPP3CCP48454 512 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 DESI1Q6ICB0 168 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 NCEH1Q6PIU2 408 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 RNF19BQ6ZMZ0 732 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 LACC1Q8IV20 430 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 CAPSLQ8WWF8 208 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 APIPQ96GX9 242 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 TPD52L3Q96J77 140 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SIGLEC11Q96RL6 698 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 COPS4Q9BT78 406 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SP140LQ9H930 580 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 CCNB1IP1Q9NPC3 277 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 THUMPD1Q9NXG2 353 aaKnown RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ASIC5Q9NY37 505 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 RNF6Q9Y252 685 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 KRT87PA6NCN2 255 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 TMEM189-UBE2V1I3L0A0 370 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 DSCR3O14972 297 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 STK16O75716 305 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 WDR47O94967 919 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 KCNK5O95279 499 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 CLDN9O95484 217 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 VNN2O95498 520 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 DGKAP23743 735 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 KDELR2P33947 212 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SLC19A1P41440 591 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 IFITM2Q01629 132 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SEMG2Q02383 582 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ZNF177Q13360 481 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SMU1Q2TAY7 513 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 PROX2Q3B8N5 592 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 C5orf22Q49AR2 442 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 UBE2UQ5VVX9 321 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 FUT10Q6P4F1 479 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 PRSS55Q6UWB4 352 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 SPATC1Q76KD6 591 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 GALNT13Q8IUC8 556 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ADGRG2Q8IZP9 1017 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 ZBTB2Q8N680 514 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 BEND7Q8N7W2 519 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 TXNDC15Q96J42 360 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 APOLD1Q96LR9 279 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 EBPLQ9BY08 206 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 HOXD1Q9GZZ0 328 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 MMP27Q9H306 513 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 CWH43Q9H720 699 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 FCF1Q9Y324 198 aaKnown RBP13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 PCDHGA6Q9Y5G7 932 aa13.69□□□□□ -0.22
CLCNKA-202ENST00000375692 A6NL46 340 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 EVPLLA8MZ36 301 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CLIC1O00299 241 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 KIAA0355O15063 1070 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 NUAK1O60285 661 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 NTRK1P04629 796 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 RPL17P18621 184 aaKnown RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 HNRNPFP52597 415 aaKnown RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 NUDT6P53370 316 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CRISP3P54108 245 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 MTA1Q13330 715 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 VMACQ2NL98 169 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 ZXDCQ2QGD7 858 aaPredicted RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 ZNF621Q6ZSS3 439 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 ZZZ3Q8IYH5 903 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 KIAA1958Q8N8K9 716 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 VN1R3Q9BXE9 311 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 REEP1Q9H902 201 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 MICAL3Q7RTP6 2002 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 PIKFYVEQ9Y2I7 2098 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CPSF4O95639 269 aaKnown RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 KRT6AP02538 564 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 KRT6BP04259 564 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 IRF1P10914 325 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 ALOX12P18054 663 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 PAX3P23760 479 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 AQP1P29972 269 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 HMGCLP35914 325 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 KRT6CP48668 564 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 SLC11A2P49281 568 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 WDR5P61964 334 aaKnown RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 ZXDBP98169 803 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CAMK2GQ13555 558 aaPredicted RBP13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 TIGD6Q17RP2 521 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 TPRG1LQ5T0D9 272 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 GPRC6AQ5T6X5 926 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 NEK10Q6ZWH5 1172 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CYP2U1Q7Z449 544 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 HEATR4Q86WZ0 1026 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 PARP16Q8N5Y8 322 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 WBP2Q969T9 261 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 TBC1D20Q96BZ9 403 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CEP295NLQ96MC4 621 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 PANX1Q96RD7 426 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 CDADC1Q9BWV3 514 aa13.68□□□□□ -0.22
CLCNKA-202ENST00000375692 OR51E2Q9H255 320 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms