RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NOVA2Q9UNW9 492 aaKnown RBP15.13■□□□□ 0.01
CLN3-201ENST00000333496 NUP210LQ5VU65 1888 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 CDC14CA4D256 554 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 NPEPPSL1A6NEC2 478 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 H0YGG7 62 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 H7BY64 318 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 MAP2K7O14733 419 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 HAT1O14929 419 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 PHGDHO43175 533 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 CNOT3O75175 753 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 KLF7O75840 302 aaPredicted RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 SASH3O75995 380 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 GUCA1CO95843 209 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ENO2P09104 434 aaPredicted RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 NPPBP16860 134 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ALAS2P22557 587 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ARSFP54793 590 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ARF3P61204 181 aaPredicted RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 VSNL1P62760 191 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 RELAQ04206 551 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ILF2Q12905 390 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 USP10Q14694 798 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 GRM7Q14831 915 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 SLC9A5Q14940 896 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 UGT8Q16880 541 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 GRTP1Q5TC63 336 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 HDXQ7Z353 690 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 PLD3Q8IV08 490 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 TMEM151BQ8IW70 566 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 OR56A3Q8NH54 315 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 ADAMTS17Q8TE56 1095 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 IFT81Q8WYA0 676 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 PYCR2Q96C36 320 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 PRAP1Q96NZ9 151 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 UNKQ9C0B0 810 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 UTP6Q9NYH9 597 aaKnown RBP15.12■□□□□ 0.01
CLN3-201ENST00000333496 NINJ2Q9NZG7 142 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 SNX7Q9UNH6 387 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 KCNMB2Q9Y691 235 aa15.12■□□□□ 0.01
CLN3-201ENST00000333496 A0A1B0GX78 115 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 DSCR3O14972 297 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 EIF2S1P05198 315 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 ATXN8OSP0DMR3 200 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 EZRP15311 586 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 SPRP35270 261 aaPredicted RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 GMPRP36959 345 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 SLC12A2P55011 1212 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 FOXL2P58012 376 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 ZKSCAN8Q15776 578 aaPredicted RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 PRTGQ2VWP7 1150 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 NKAIN1Q4KMZ8 207 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 YOD1Q5VVQ6 348 aaPredicted RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 MLIPQ5VWP3 458 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 MRPL14Q6P1L8 145 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 LCTLQ6UWM7 567 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 SPATA6LQ8N4H0 392 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 ALKBH8Q96BT7 664 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 FBXL8Q96CD0 374 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 OR4K3Q96R72 315 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 TRIM54Q9BYV2 358 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 PCBD2Q9H0N5 130 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 ACBD3Q9H3P7 528 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 TMEM184CQ9NVA4 438 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 MTRF1LQ9UGC7 380 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 POLHQ9Y253 713 aa15.11■□□□□ 0.01
CLN3-201ENST00000333496 SPENQ96T58 3664 aaKnown RBP15.11■□□□□ 0.01
CLN3-201ENST00000333496 TNRC6AQ8NDV7 1962 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 HYKKA2RU49 373 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 EIF4E1BA6NMX2 242 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 C9J4A7 227 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 ONECUT2O95948 504 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CCDC166P0CW27 439 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 STMN1P16949 149 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CCND1P24385 295 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CCR10P46092 362 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 POLE2P56282 527 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CSNK1G2P78368 415 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 TSNQ15631 228 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 HKDC1Q2TB90 917 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 FAM214AQ32MH5 1076 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 BEND6Q5SZJ8 279 aaPredicted RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 COX15Q7KZN9 410 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 ADCK2Q7Z695 626 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 ZNF843Q8N446 348 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 TTC29Q8NA56 475 aaPredicted RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 APOBEC4Q8WW27 367 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 UBXN10Q96LJ8 280 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 C10orf90Q96M02 699 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 FMO2Q99518 471 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 DHRS4Q9BTZ2 278 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 DERL2Q9GZP9 239 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CDC42EP4Q9H3Q1 356 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 IFT80Q9P2H3 777 aaPredicted RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 NDOR1Q9UHB4 597 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 OARD1Q9Y530 152 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 OR1D4P47884 311 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 RAB10P61026 200 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 NAB1Q13506 487 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 CAPN13Q6MZZ7 669 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms