RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 PPP4R4Q6NUP7 873 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 UNC5DQ6UXZ4 953 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 LRRTM4Q86VH4 590 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 CALHM3Q86XJ0 350 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 SYT12Q8IV01 421 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 OXR1Q8N573 874 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 C1orf52Q8N6N3 182 aaKnown RBP6.32□□□□□ -1.4
USP47-201ENST00000305481 ZNF740Q8NDX6 193 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 OR2T12Q8NG77 320 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 FAM131CQ96AQ9 280 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 ITCHQ96J02 903 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 MENTQ9BUN1 341 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 OSBPL6Q9BZF3 934 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 SCOCQ9UIL1 159 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 MAGEL2Q9UJ55 1249 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 ANAPC2Q9UJX6 822 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 EXO1Q9UQ84 846 aaKnown RBP6.32□□□□□ -1.4
USP47-201ENST00000305481 ASF1AQ9Y294 204 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 V9GYQ6 96 aa6.32□□□□□ -1.4
USP47-201ENST00000305481 C1GALT1C1LP0DN25 315 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 UMPSP11172 480 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 HSD3B1P14060 373 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 COL9A1P20849 921 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 PRPS1L1P21108 318 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 HSD3B2P26439 372 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CCR3P51677 355 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 C21orf58P58505 322 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 RPA4Q13156 261 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 HTR4Q13639 388 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NKG7Q16617 165 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 MFSD4BQ5TF39 518 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 MED27Q6P2C8 311 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ISLR2Q6UXK2 745 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 LAS2Q8IYD9 372 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 IL17RCQ8NAC3 791 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 TFGQ92734 400 aaPredicted RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 SEPHS2Q99611 448 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CENPKQ9BS16 269 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 TBCDQ9BTW9 1192 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 C1QTNF2Q9BXJ5 285 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 REXO4Q9GZR2 422 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 EHD1Q9H4M9 534 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 GORASP2Q9H8Y8 452 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ITM2CQ9NQX7 267 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 IRAK4Q9NWZ3 460 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 FBXL12Q9NXK8 326 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 RUVBL1Q9Y265 456 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 WDR37Q9Y2I8 494 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 PIPSLA2A3N6 862 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 PRR23AA6NEV1 266 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 SAC3D1A6NKF1 404 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 GABRR3A8MPY1 467 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ANHXE9PGG2 379 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 EGFP01133 1207 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 LAMP1P11279 417 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ERGP11308 486 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 PAX7P23759 505 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 FASP25445 335 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 RPL10P27635 214 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 KIR3DL1P43629 444 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ACSM2AQ08AH3 577 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 SLBPQ14493 270 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP47-201ENST00000305481 C11orf91Q3C1V1 193 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 TMEM259Q4ZIN3 620 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 FOXB2Q5VYV0 432 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ACSM2BQ68CK6 577 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NXPE4Q6UWF7 544 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 GCNT7Q6ZNI0 430 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 ZBTB49Q6ZSB9 765 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NUDT18Q6ZVK8 323 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 VN1R5Q7Z5H4 357 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 GPR180Q86V85 440 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 FAM9CQ8IZT9 166 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CBR4Q8N4T8 237 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 SLC5A11Q8WWX8 675 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CENPNQ96H22 339 aaPredicted RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 MSLNLQ96KJ4 702 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CNBD2Q96M20 576 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NSMCE2Q96MF7 247 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 GABRG3Q99928 467 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 WDR26Q9H7D7 661 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NTN4Q9HB63 628 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 OAZ3Q9UMX2 235 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 INVSQ9Y283 1065 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 FOXE1O00358 373 aaPredicted RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 LATO43561 262 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 PLRG1O43660 514 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 TBX6O95947 436 aaPredicted RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 ANXA6P08133 673 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NTSR1P30989 418 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CHN2P52757 468 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 POLE2P56282 527 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 NHSL2Q5HYW2 709 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 IER5LQ5T953 404 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 INTS11Q5TA45 600 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 ZNF776Q68DI1 518 aaPredicted RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 DUS1LQ6P1R4 473 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 ENPP6Q6UWR7 440 aa6.31□□□□□ -1.4
USP47-201ENST00000305481 CHERPQ8IWX8 916 aaKnown RBP6.31□□□□□ -1.4
USP47-201ENST00000305481 CLECL1Q8IZS7 167 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms