RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 RIMS3Q9UJD0 308 aa8.6□□□□□ -1.03
TDP1-210ENST00000554976 TCRBV5S2A0A599 114 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 FOXE1O00358 373 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 SCN2BO60939 215 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 IGHV4-34P06331 123 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 ACSL1P33121 698 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 GZMMP51124 257 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SLC7A2P52569 658 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 PRKG2Q13237 762 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 CAPRIN1Q14444 709 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 CLCA4Q14CN2 919 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 LRRC23Q53EV4 343 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 XKR6Q5GH73 641 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 TICAM1Q8IUC6 712 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 PHC3Q8NDX5 983 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 OR7G3Q8NG95 312 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 OR4K1Q8NGD4 311 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 FAM3CQ92520 227 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 CCDC124Q96CT7 223 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 SIPA1Q96FS4 1042 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 MRPL40Q9NQ50 206 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 PHPT1Q9NRX4 125 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 C2orf42Q9NWW7 574 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SLC25A37Q9NYZ2 338 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 ACSL5Q9ULC5 683 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 EXO1Q9UQ84 846 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 NUMA1Q14980 2115 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 A6NCN8 305 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 POM121BA6NF01 834 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 ANGPT2O15123 496 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 C1GALT1C1LP0DN25 315 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 PRPS2P11908 318 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 KELP23276 732 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 MSX2P35548 267 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 WNT3P56703 355 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 PWP1Q13610 501 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SELPLGQ14242 412 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 MMEL1Q495T6 779 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 TIGD2Q4W5G0 525 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SAMD4BQ5PRF9 694 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 CAPN13Q6MZZ7 669 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 NXPE4Q6UWF7 544 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 CAMKMTQ7Z624 323 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 TBC1D21Q8IYX1 336 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 RNF148Q8N7C7 305 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 BHLHE22Q8NFJ8 381 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 TFGQ92734 400 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 ZUFSPQ96AP4 578 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 MED8Q96G25 268 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 ZNF570Q96NI8 536 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 IL17FQ96PD4 163 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 TSC22D3Q99576 134 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 PAIP1Q9H074 479 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 PCDHAC1Q9H158 963 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 FGF22Q9HCT0 170 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SLC6A13Q9NSD5 602 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 NMRK1Q9NWW6 199 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 SCHIP1Q9P0W5 487 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 PLAGL1Q9UM63 463 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 COLQQ9Y215 455 aaPredicted RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 EIF3LQ9Y262 564 aaKnown RBP8.59□□□□□ -1.03
TDP1-210ENST00000554976 GMEB1Q9Y692 573 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 CEP290O15078 2479 aa8.59□□□□□ -1.03
TDP1-210ENST00000554976 TCRBV21S2A2A0A5A6 115 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 PIPSLA2A3N6 862 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 CFLARO15519 480 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 SEC22BO75396 215 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 PCSK2P16519 638 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 ATP6V1B2P21281 511 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 HALP42357 657 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 DGKQP52824 942 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 AP2B1P63010 937 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 IRF8Q02556 426 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 LEXMQ3ZCV2 418 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 LCN8Q6JVE9 175 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 NANOGP8Q6NSW7 305 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 GALNT18Q6P9A2 607 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 Q6ZS52 159 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 DHDDSQ86SQ9 333 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 LILRA2Q8N149 483 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 TMEM102Q8N9M5 508 aaPredicted RBP8.59□□□□□ -1.04
TDP1-210ENST00000554976 OR2T34Q8NGX1 318 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 HUS1BQ8NHY5 278 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 SLC5A11Q8WWX8 675 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 ANKRD27Q96NW4 1050 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 ELOVL6Q9H5J4 265 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 NANOGQ9H9S0 305 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 PCOLCE2Q9UKZ9 415 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 DUSP12Q9UNI6 340 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 ERVK-11Q9UQG0 969 aa8.59□□□□□ -1.04
TDP1-210ENST00000554976 IGKV1-8A0A0C4DH67 115 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 PRSS38A1L453 326 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 MAGEB17A8MXT2 336 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 IGFBP4P22692 258 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 HRH2P25021 359 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 PEBP1P30086 187 aaKnown RBP8.58□□□□□ -1.04
TDP1-210ENST00000554976 PKLRP30613 574 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 EEFSECP57772 596 aaKnown RBP8.58□□□□□ -1.04
TDP1-210ENST00000554976 GAS6Q14393 721 aa8.58□□□□□ -1.04
TDP1-210ENST00000554976 SGO1Q5FBB7 561 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms