RNA–Protein interactions for RNA: ENST00000553745.5

ABCD4-219, Transcript of ATP binding cassette subfamily D member 4, human

TSL 2

Gene ABCD4, Length 1,770 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-219	ENST00000553745	CAPN3	P20807	821 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	IMPA1	P29218	277 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	GDF5	P43026	501 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	DHPS	P49366	369 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	GRIK2	Q13002	908 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	CLCA4	Q14CN2	919 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	UAP1L1	Q3KQV9	507 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	CDKL4	Q5MAI5	379 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	LYSMD4	Q5XG99	296 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR52E8	Q6IFG1	317 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	BMP8A	Q7Z5Y6	402 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	DCP2	Q8IU60	420 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	DCUN1D3	Q8IWE4	304 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	PHC3	Q8NDX5	983 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR5K2	Q8NHB8	316 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	FBXL8	Q96CD0	374 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	BTBD9	Q96Q07	612 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	SPAG4	Q9NPE6	437 aa		13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	IMP3	Q9NV31	184 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	STOX2	Q9P2F5	926 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	APOBEC3B	Q9UH17	382 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	TNPO3	Q9Y5L0	923 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-219	ENST00000553745	DMD	P11532	3685 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR52A4P	A6NMU1	304 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	BCAT2	O15382	392 aa	Predicted RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	HR	O43593	1189 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	SLC16A8	O95907	504 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	LYN	P07948	512 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	IDO1	P14902	403 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	TCN1	P20061	433 aa	Predicted RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	ZFP36L2	P47974	494 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	SLC6A12	P48065	614 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	CSNK1E	P49674	416 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	HNMT	P50135	292 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	NXPH1	P58417	271 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	ILF3	Q12906	894 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	KIF19	Q2TAC6	998 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	PLK5	Q496M5	336 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	COQ5	Q5HYK3	327 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	SAMD4B	Q5PRF9	694 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	BLOC1S3	Q6QNY0	202 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	GPRIN3	Q6ZVF9	776 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	GOLGA7	Q7Z5G4	137 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	C11orf74	Q86VG3	221 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	TCAIM	Q8N3R3	496 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	TMEM102	Q8N9M5	508 aa	Predicted RBP	13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	PCYOX1L	Q8NBM8	494 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	TSPEAR	Q8WU66	669 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	PYCR2	Q96C36	320 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	CCDC138	Q96M89	665 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	CD244	Q9BZW8	370 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	ATG10	Q9H0Y0	220 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	PCDHAC1	Q9H158	963 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	AIG1	Q9NVV5	245 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	ABCD2	Q9UBJ2	740 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	OPTC	Q9UBM4	332 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	PLAGL1	Q9UM63	463 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	DTNA	Q9Y4J8	743 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	SDK1	Q7Z5N4	2213 aa		13.62	□□□□□ -0.23
ABCD4-219	ENST00000553745	TCRBV3S1	A0A5B6	114 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	FXYD1	O00168	92 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	NR5A2	O00482	541 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	CRCP	O75575	148 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR4F21	O95013	312 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	JUND	P17535	347 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	GGT5	P36269	586 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	AFF3	P51826	1226 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	NME5	P56597	212 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	ERVPABLB-1	P60509	514 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	PRKG2	Q13237	762 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	GTF2H2	Q13888	395 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	RBBP7	Q16576	425 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	PTCHD3	Q3KNS1	767 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	C6orf10	Q5SRN2	563 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	GTF2H2C	Q6P1K8	395 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	APLF	Q8IW19	511 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	MINDY1	Q8N5J2	469 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	LMNTD1	Q8N9Z9	388 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	ADCY4	Q8NFM4	1077 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR9A1P	Q8NGU1	263 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	OR2T11	Q8NH01	316 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	GPBAR1	Q8TDU6	330 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	CCT7	Q99832	543 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	PKP2	Q99959	881 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	HOPX	Q9BPY8	73 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	LRRC61	Q9BV99	259 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	GSDMC	Q9BYG8	508 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	BRINP2	Q9C0B6	783 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	TRIT1	Q9H3H1	467 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	COPS7B	Q9H9Q2	264 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	SCOC	Q9UIL1	159 aa		13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745	TDRKH	Q9Y2W6	561 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-219	ENST00000553745		A6NCN8	305 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	FAM86C2P	A6NEL3	165 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745		K7EPI3	171 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	VILL	O15195	856 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	STK16	O75716	305 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	WDR47	O94967	919 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	CSF2	P04141	144 aa		13.6	□□□□□ -0.23
ABCD4-219	ENST00000553745	RPN2	P04844	631 aa		13.6	□□□□□ -0.23

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