RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ZGRF1Q86YA3 2104 aa20.57■□□□□ 0.88
USP40-215ENST00000484528 DIDO1Q9BTC0 2240 aaKnown RBP20.56■□□□□ 0.88
USP40-215ENST00000484528 VSTM2BA6NLU5 285 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 KIF5CO60282 957 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 FBLP22087 321 aaKnown RBP20.56■□□□□ 0.88
USP40-215ENST00000484528 VARSP26640 1264 aaKnown RBP20.56■□□□□ 0.88
USP40-215ENST00000484528 GLRBP48167 497 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 KLC1Q07866 573 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 MUM1Q2TAK8 710 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 IRAK1BP1Q5VVH5 260 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 ZNF549Q6P9A3 640 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 Q6ZS92 163 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 NACC2Q96BF6 587 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 C8orf44Q96CB5 159 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 PLCD4Q9BRC7 762 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 XAB2Q9HCS7 855 aaKnown RBP20.56■□□□□ 0.88
USP40-215ENST00000484528 SEMA3GQ9NS98 782 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 PLEKHB1Q9UF11 243 aaPredicted RBP20.56■□□□□ 0.88
USP40-215ENST00000484528 VPS9D1Q9Y2B5 631 aa20.56■□□□□ 0.88
USP40-215ENST00000484528 TEX15Q9BXT5 2789 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 POLEQ07864 2286 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 IGKV1-8A0A0C4DH67 115 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 ZCWPW2A0A1B0GU75 182 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 A1L4Q6 167 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 SDR42E2A6NKP2 422 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 SLC16A8O95907 504 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 SYF2O95926 243 aaKnown RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 COILP38432 576 aaPredicted RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 SLC1A2P43004 574 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 PNLIPRP1P54315 467 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 OCA2Q04671 838 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 HKDC1Q2TB90 917 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 PRTGQ2VWP7 1150 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 TTLL9Q3SXZ7 439 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 VWA2Q5GFL6 755 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 ICE2Q659A1 982 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 CCDC137Q6PK04 289 aaKnown RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 PAQR7Q86WK9 346 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 AGGF1Q8N302 714 aaeCLIP20.55■□□□□ 0.88
USP40-215ENST00000484528 RASGEF1CQ8N431 466 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 MIEF2Q96C03 454 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 THOC3Q96J01 351 aaKnown RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 WDR77Q9BQA1 342 aaPredicted RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 YIPF2Q9BWQ6 316 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 CCDC68Q9H2F9 335 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 ZNF282Q9UDV7 671 aaPredicted RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 RUVBL1Q9Y265 456 aaKnown RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 MED16Q9Y2X0 877 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 PCDHGA10Q9Y5H3 936 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 COPG1Q9Y678 874 aaKnown RBP20.55■□□□□ 0.88
USP40-215ENST00000484528 MAD1L1Q9Y6D9 718 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 CENPEQ02224 2701 aa20.55■□□□□ 0.88
USP40-215ENST00000484528 VPS26AO75436 327 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 ZGLP1P0C6A0 271 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 MLNP12872 115 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 Q0VFX4 171 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 NAA25Q14CX7 972 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 AGAP7PQ5VUJ5 663 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 PRMT9Q6P2P2 845 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 ADCK2Q7Z695 626 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 CSNK1A1LQ8N752 337 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 MCUQ8NE86 351 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 ZNF480Q8WV37 535 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 CNDP1Q96KN2 507 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 AGAP4Q96P64 663 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 GPR21Q99679 349 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 ZNF160Q9HCG1 818 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 C20orf96Q9NUD7 363 aaPredicted RBP20.54■□□□□ 0.88
USP40-215ENST00000484528 PCYOX1Q9UHG3 505 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 C3orf18Q9UK00 162 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 NOVA2Q9UNW9 492 aaKnown RBP20.54■□□□□ 0.88
USP40-215ENST00000484528 SCN3AQ9NY46 2000 aa20.54■□□□□ 0.88
USP40-215ENST00000484528 SMAPO00193 183 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 CBX6O95503 412 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 STATHP02808 62 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 ACPPP15309 386 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 MPP1Q00013 466 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 ARHGAP19Q14CB8 494 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 C4orf17Q53FE4 359 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 CRB2Q5IJ48 1285 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 ARMC3Q5W041 872 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 LINC00696Q6ZRV3 163 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 PIWIL4Q7Z3Z4 852 aaKnown RBP20.53■□□□□ 0.88
USP40-215ENST00000484528 LAPTM4BQ86VI4 370 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 PLD3Q8IV08 490 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 LHPPQ9H008 270 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 CUEDC1Q9NWM3 386 aaPredicted RBP20.53■□□□□ 0.88
USP40-215ENST00000484528 TRPC4Q9UBN4 977 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 NEU2Q9Y3R4 380 aa20.53■□□□□ 0.88
USP40-215ENST00000484528 MAGEB16A2A368 324 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 E7ENX8 843 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 MAP2K7O14733 419 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 NRDCO43847 1150 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 CARSP49589 748 aaKnown RBP20.52■□□□□ 0.88
USP40-215ENST00000484528 TAP2Q03519 686 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 PRDX1Q06830 199 aaKnown RBP20.52■□□□□ 0.88
USP40-215ENST00000484528 LONRF1Q17RB8 773 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 THEMIS2Q5TEJ8 643 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 FAAH2Q6GMR7 532 aa20.52■□□□□ 0.88
USP40-215ENST00000484528 ZNF425Q6IV72 752 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms