RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KIRREL2Q6UWL6 708 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 KCNMB4Q86W47 210 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 LMNTD2Q8IXW0 634 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 RAB42Q8N4Z0 105 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 INPP5DQ92835 1189 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 IP6K3Q96PC2 410 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 OR2A5Q96R48 311 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 EBNA1BP2Q99848 306 aaKnown RBP13.46□□□□□ -0.25
UPF3A-204ENST00000475218 ZFYVE21Q9BQ24 234 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 SOX17Q9H6I2 414 aaPredicted RBP13.46□□□□□ -0.25
UPF3A-204ENST00000475218 FAM114A2Q9NRY5 505 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 ZC3H7BQ9UGR2 993 aaKnown RBP13.46□□□□□ -0.25
UPF3A-204ENST00000475218 TAC3Q9UHF0 121 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 ADAMTS6Q9UKP5 1117 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 GOLGA6L10A0A0M3HER8 536 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 AGPSO00116 658 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CD63P08962 238 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 PGAM1P18669 254 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 IMPA1P29218 277 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CMPK1P30085 196 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CDKN2DP55273 166 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 PRDX1Q06830 199 aaKnown RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 MYBPC3Q14896 1274 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 PPP1R7Q15435 360 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 ZXDCQ2QGD7 858 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 HKDC1Q2TB90 917 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 TTLL9Q3SXZ7 439 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CNTN4Q8IWV2 1026 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 SHISA5Q8N114 240 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 GALNT16Q8N428 558 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 MRPS30Q9NP92 439 aaKnown RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CUEDC1Q9NWM3 386 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 ASIC3Q9UHC3 531 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 FBXL4Q9UKA2 621 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 SH2B3Q9UQQ2 575 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 MAST4O15021 2626 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 TTLL8A6PVC2 850 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 P2RX6O15547 441 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 AHSGP02765 367 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 EIF2S1P05198 315 aaKnown RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 ENO3P13929 434 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 RPA3P35244 121 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 EFNA3P52797 238 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 UBAP2LQ14157 1087 aaKnown RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 VWA5B1Q5TIE3 1220 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 MBOAT1Q6ZNC8 495 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 TTC29Q8NA56 475 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 CPT1CQ8TCG5 803 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 EEF1AKMT1Q8WVE0 214 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 PDLIM2Q96JY6 352 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 FER1L6-AS2Q96M78 137 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 FAM167BQ9BTA0 163 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 ANKMY1Q9P2S6 941 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 PYCARDQ9ULZ3 195 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 RUVBL1Q9Y265 456 aaKnown RBP13.45□□□□□ -0.26
UPF3A-204ENST00000475218 COMMD10Q9Y6G5 202 aa13.45□□□□□ -0.26
UPF3A-204ENST00000475218 IGLV3-12A0A075B6K2 115 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 SMAPO00193 183 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 PEX12O00623 359 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 HAT1O14929 419 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 FOXS1O43638 330 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 DPM1O60762 260 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 TSPAN12O95859 305 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 TCP1P17987 556 aaKnown RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 Q0VFX4 171 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 FAM214AQ32MH5 1076 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 PLEKHN1Q494U1 663 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 HP1BP3Q5SSJ5 553 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 TRMT10BQ6PF06 316 aaKnown RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 IGFL3Q6UXB1 125 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 UBE2R2Q712K3 238 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 LAPTM4BQ86VI4 370 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 PLD3Q8IV08 490 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 AMER2Q8N7J2 671 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 AMER3Q8N944 861 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 CALML6Q8TD86 181 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 CAPZA3Q96KX2 299 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 MRPS2Q9Y399 296 aaKnown RBP13.44□□□□□ -0.26
UPF3A-204ENST00000475218 CSAG2Q9Y5P2 127 aa13.44□□□□□ -0.26
UPF3A-204ENST00000475218 FFAR3O14843 346 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 GPR42O15529 346 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 RRP9O43818 475 aaKnown RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 SYF2O95926 243 aaKnown RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 GNLYP22749 145 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 HSD17B2P37059 387 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 EMP3P54852 163 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 KLC1Q07866 573 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 TSTA3Q13630 321 aaPredicted RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 INPP5JQ15735 1006 aaPredicted RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 BBS9Q3SYG4 887 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 CRB2Q5IJ48 1285 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 SPANXN3Q5MJ09 141 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PAQR3Q6TCH7 311 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 CSNK1A1LQ8N752 337 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 CLEC1AQ8NC01 280 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 OR11G2Q8NGC1 345 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 STT3BQ8TCJ2 826 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PNPLA2Q96AD5 504 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 NACC2Q96BF6 587 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 TRIM51Q9BSJ1 452 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms