RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 VWA5B1Q5TIE3 1220 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 ICE2Q659A1 982 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 KIRREL2Q6UWL6 708 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 IGFL3Q6UXB1 125 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 PIWIL4Q7Z3Z4 852 aaKnown RBP17.72■□□□□ 0.43
COL7A1-209ENST00000474432 CPNE9Q8IYJ1 553 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL7A1-209ENST00000474432 OR2A5Q96R48 311 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 SOX17Q9H6I2 414 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-209ENST00000474432 MRPS30Q9NP92 439 aaKnown RBP17.72■□□□□ 0.43
COL7A1-209ENST00000474432 IARS2Q9NSE4 1012 aaKnown RBP17.72■□□□□ 0.43
COL7A1-209ENST00000474432 ANKMY1Q9P2S6 941 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 TAC3Q9UHF0 121 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 PCYOX1Q9UHG3 505 aa17.72■□□□□ 0.43
COL7A1-209ENST00000474432 SPTAN1Q13813 2472 aaKnown RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 NAV2Q8IVL1 2488 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 ALOX12BO75342 701 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 ERVK-10P10266 1014 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 PIM1P11309 404 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 ENO3P13929 434 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 PGAM1P18669 254 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 GNLYP22749 145 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 RPA3P35244 121 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 HSD17B2P37059 387 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 INPP5JQ15735 1006 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 TTLL9Q3SXZ7 439 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 PLEKHN1Q494U1 663 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 KCNMB4Q86W47 210 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 CLEC1AQ8NC01 280 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 C2CD4AQ8NCU7 369 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 GALNT11Q8NCW6 608 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 CALML6Q8TD86 181 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 PNPLA2Q96AD5 504 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 EBNA1BP2Q99848 306 aaKnown RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 WDR83Q9BRX9 315 aaKnown RBP17.71■□□□□ 0.43
COL7A1-209ENST00000474432 ZNF304Q9HCX3 659 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 ATP13A2Q9NQ11 1180 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 FBXL4Q9UKA2 621 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 COMMD10Q9Y6G5 202 aa17.71■□□□□ 0.43
COL7A1-209ENST00000474432 IGLV3-12A0A075B6K2 115 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 GOLGA6L10A0A0M3HER8 536 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 IGHEP01854 428 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 EIF2S1P05198 315 aaKnown RBP17.7■□□□□ 0.42
COL7A1-209ENST00000474432 IMPA1P29218 277 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 EMP3P54852 163 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 RELAQ04206 551 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 ESPL1Q14674 2120 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 PPP1R7Q15435 360 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 HKDC1Q2TB90 917 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 CRB2Q5IJ48 1285 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 ATCAYQ86WG3 371 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 STT3BQ8TCJ2 826 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 PWWP2AQ96N64 755 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 NDNQ99608 321 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 FAM167BQ9BTA0 163 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 CUEDC1Q9NWM3 386 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-209ENST00000474432 CDC23Q9UJX2 597 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 ADAMTS6Q9UKP5 1117 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 G3BP2Q9UN86 482 aaKnown RBP17.7■□□□□ 0.42
COL7A1-209ENST00000474432 RUVBL1Q9Y265 456 aaKnown RBP17.7■□□□□ 0.42
COL7A1-209ENST00000474432 CNTRLQ7Z7A1 2325 aa17.7■□□□□ 0.42
COL7A1-209ENST00000474432 HIVEP3Q5T1R4 2406 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 SMAPO00193 183 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 TP73O15350 636 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 KLC1Q07866 573 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 Q0VFX4 171 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 NAA25Q14CX7 972 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 ZXDCQ2QGD7 858 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-209ENST00000474432 RBM20Q5T481 1227 aaKnown RBP17.69■□□□□ 0.42
COL7A1-209ENST00000474432 PRMT9Q6P2P2 845 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 LAPTM4BQ86VI4 370 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 CREG2Q8IUH2 290 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 CNTN4Q8IWV2 1026 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 FAM26EQ8N5C1 309 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 OR11G2Q8NGC1 345 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 EEF1AKMT1Q8WVE0 214 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 CCDC68Q9H2F9 335 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 SLC17A6Q9P2U8 582 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 ASIC3Q9UHC3 531 aa17.69■□□□□ 0.42
COL7A1-209ENST00000474432 NXT1Q9UKK6 140 aaKnown RBP17.69■□□□□ 0.42
COL7A1-209ENST00000474432 UTP20O75691 2785 aaKnown RBP17.69■□□□□ 0.42
COL7A1-209ENST00000474432 EIF3FO00303 357 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 FANCGO15287 622 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 P2RX6O15547 441 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 FOXS1O43638 330 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 ZBTB14O43829 449 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 SYF2O95926 243 aaKnown RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 AHSGP02765 367 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 ZGLP1P0C6A0 271 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 TCP1P17987 556 aaKnown RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 CDKN2DP55273 166 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 ABATP80404 500 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 AIMP2Q13155 320 aaKnown RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 TSTA3Q13630 321 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 MUM1Q2TAK8 710 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 VWA2Q5GFL6 755 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 PRAMEF13Q5VWM6 474 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 PAQR3Q6TCH7 311 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 UBE2R2Q712K3 238 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-209ENST00000474432 PLD3Q8IV08 490 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms