RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NMRK1Q9NWW6 199 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 SOHLH2Q9NX45 425 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 ADGRE2Q9UHX3 823 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 PCDHGA11Q9Y5H2 935 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 PCDHGA1Q9Y5H4 931 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 BTN3A3O00478 584 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TOX3O15405 576 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 RFPL3O75679 317 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 C1GALT1C1LP0DN25 315 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 FGF3P11487 239 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 SERPINB1P30740 379 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 CDH13P55290 713 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TBCCQ15814 346 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 C18orf21Q32NC0 220 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 UNC50Q53HI1 259 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 SNAP47Q5SQN1 464 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ATG9BQ674R7 924 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 NXPE4Q6UWF7 544 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ZCCHC23Q6ZST2 131 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 USP53Q70EK8 1073 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 KMT5CQ86Y97 462 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 WDR75Q8IWA0 830 aaKnown RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 SFTPA2Q8IWL1 248 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 LINC01555Q8NAE3 123 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 RSC1A1Q92681 617 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 RERGQ96A58 199 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 GRAMD1AQ96CP6 724 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TMEM74Q96NL1 305 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ZNF382Q96SR6 550 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 DPH7Q9BTV6 452 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 NTMT1Q9BV86 223 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 STRADBQ9C0K7 418 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ELOVL6Q9H5J4 265 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 PDE7BQ9NP56 450 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 IRAK4Q9NWZ3 460 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 KLHL3Q9UH77 587 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 POMT2Q9UKY4 750 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 RAP2CQ9Y3L5 183 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 EP300Q09472 2414 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 KRT87PA6NCN2 255 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ANKDD1BA6NHY2 528 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TXNDC9O14530 226 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 GDF9O60383 454 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ZBTB11O95625 1053 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 ESRRBO95718 433 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TROVE2P10155 538 aaKnown RBP eCLIP9.73□□□□□ -0.85
CD44-207ENST00000425428 CDH1P12830 882 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 MYF5P13349 255 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 EZRP15311 586 aaKnown RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 GSTM2P28161 218 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 MLLT3P42568 568 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 RPS15AP62244 130 aaKnown RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 CCL7P80098 99 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 GUCY1A3Q02108 690 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 SQSTM1Q13501 440 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 RBBP5Q15291 538 aaKnown RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 ARL13AQ5H913 290 aaPredicted RBP9.73□□□□□ -0.85
CD44-207ENST00000425428 NKAIN2Q5VXU1 208 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 MED27Q6P2C8 311 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 FAM92BQ6ZTR7 304 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 CLYBLQ8N0X4 340 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 OR4D9Q8NGE8 314 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 OR2A1Q8NGT9 310 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 METTL6Q8TCB7 284 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 NEIL2Q969S2 332 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TCTN2Q96GX1 697 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 OR2A14Q96R47 310 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 CCT7Q99832 543 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 MENTQ9BUN1 341 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 PITPNM3Q9BZ71 974 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 RXFP3Q9NSD7 469 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 TRPS1Q9UHF7 1281 aa9.73□□□□□ -0.85
CD44-207ENST00000425428 ASXL3Q9C0F0 2248 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 FAM186AA6NE01 2351 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 URADA6NGE7 173 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 TCP11X1B4DZS4 312 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 E7EQ34 232 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 H7BY64 318 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 B4GAT1O43505 415 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 UROSP10746 265 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 PCNAP12004 261 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 CSRP1P21291 193 aaKnown RBP9.72□□□□□ -0.85
CD44-207ENST00000425428 TGM1P22735 817 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 CD1CP29017 333 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 CSTF2P33240 577 aaKnown RBP eCLIP9.72□□□□□ -0.85
CD44-207ENST00000425428 RPL14P50914 215 aaKnown RBP9.72□□□□□ -0.85
CD44-207ENST00000425428 BST1Q10588 318 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 TRA2AQ13595 282 aaKnown RBP eCLIP9.72□□□□□ -0.85
CD44-207ENST00000425428 SH2D4BQ5SQS7 431 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 PERM1Q5SV97 790 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 PHF19Q5T6S3 580 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 GRHL2Q6ISB3 625 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 FIGLAQ6QHK4 219 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 RBM44Q6ZP01 1051 aaKnown RBP9.72□□□□□ -0.85
CD44-207ENST00000425428 CPLX4Q7Z7G2 160 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 CUZD1Q86UP6 607 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 LRRC56Q8IYG6 542 aaPredicted RBP9.72□□□□□ -0.85
CD44-207ENST00000425428 THAP11Q96EK4 314 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 SEC16BQ96JE7 1060 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms