RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 SLC13A5Q86YT5 568 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 PARP9Q8IXQ6 854 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 KBTBD2Q8IY47 623 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 C2orf73Q8N5S3 287 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 BCORP1Q8N888 145 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 OR2L3Q8NG85 312 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 OR2A1Q8NGT9 310 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 STT3BQ8TCJ2 826 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 GRHL3Q8TE85 626 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 SKA2Q8WVK7 121 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 IL17FQ96PD4 163 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 SOX17Q9H6I2 414 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 CHRAC1Q9NRG0 131 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ZC3H7BQ9UGR2 993 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ZKSCAN5Q9Y2L8 839 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 A0A1W2PQ72 361 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 DYTNA2CJ06 578 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 ZNF839A8K0R7 811 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 CTSVO60911 334 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 ERVK-10P10266 1014 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 PKMP14618 531 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 GRIA1P42261 906 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 SEMA3AQ14563 771 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 CCNG2Q16589 344 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 ANKRD20A4Q4UJ75 823 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 DRICH1Q6PGQ1 229 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 RIPOR1Q6ZS17 1223 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 RNF44Q7L0R7 432 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 NDUFAF7Q7L592 441 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 ATG4AQ8WYN0 398 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 HAS2Q92819 552 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 ZFYVE21Q9BQ24 234 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 TRIM56Q9BRZ2 755 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 TSGA10Q9BZW7 698 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 TREX1Q9NSU2 369 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 CTSFQ9UBX1 484 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 C3orf18Q9UK00 162 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 VPS9D1Q9Y2B5 631 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 CSAG2Q9Y5P2 127 aa17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 DIDO1Q9BTC0 2240 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-227ENST00000602011 OR2A25A4D2G3 310 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 MATN4O95460 622 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 ESR1P03372 595 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 STSP08842 583 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 MCM3P25205 808 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 TNFRSF8P28908 595 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 KLC1Q07866 573 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 KRT222Q8N1A0 295 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 LKAAEAR1Q8TD35 194 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 MAIP1Q8WWC4 291 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 SMPDL3AQ92484 453 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 MIPEPQ99797 713 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 FAM114A2Q9NRY5 505 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 C14orf105Q9NVL8 296 aa17■□□□□ 0.31
SHKBP1-227ENST00000602011 NSG1A0A0A6YYJ2 146 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 TRAV17A0A0B4J275 112 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 A0A0J9YVX5 310 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 LRRTM2O43300 516 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 HNRNPRO43390 633 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 CCNDBP1O95273 360 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 SERPINA7P05543 415 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 EMP2P54851 167 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 DSG2Q14126 1118 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 ZRSR2Q15696 482 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 PRTGQ2VWP7 1150 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 FBXO42Q6P3S6 717 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 TAX1BP1Q86VP1 789 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 OR9A1PQ8NGU1 263 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 CNDP1Q96KN2 507 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 SLX1AQ9BQ83 275 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 KIFC1Q9BW19 673 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 TGIF2Q9GZN2 237 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 OLAHQ9NV23 265 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 MARCH4Q9P2E8 410 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 KLHL42Q9P2K6 505 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 ENTPD4Q9Y227 616 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 OSGIN2Q9Y236 505 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 MRPS2Q9Y399 296 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 MAU2Q9Y6X3 613 aa16.99■□□□□ 0.31
SHKBP1-227ENST00000602011 PCM1Q15154 2024 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 ALOX12BO75342 701 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 BMP10O95393 424 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 EIF2S1P05198 315 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 CYC1P08574 325 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 PRF1P14222 555 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 FBLP22087 321 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 SESN2P58004 480 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 ARG2P78540 354 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 ABATP80404 500 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 SARNPP82979 210 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 LDB1Q86U70 411 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 OR1N1Q8NGS0 311 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 DNAJB8Q8NHS0 232 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 C1orf54Q8WWF1 131 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 RELTQ969Z4 430 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 PLCD4Q9BRC7 762 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 DPH7Q9BTV6 452 aa16.98■□□□□ 0.31
SHKBP1-227ENST00000602011 MKKSQ9NPJ1 570 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms