RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CRELD1Q96HD1 420 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TEFMQ96QE5 360 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 DPH7Q9BTV6 452 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF180Q9UJW8 692 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 OARD1Q9Y530 152 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 APC2O95996 2303 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ADAMTS20P59510 1910 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 A0A096LPK6 155 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 LOC105369274A0A096LPK9 316 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 LOC102723532A0A0G2JNH3 316 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 EXOC1LA0A1B0GW35 172 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 OR2A25A4D2G3 310 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 TARM1B6A8C7 271 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 TRIM49D1C9J1S8 452 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 KLK10O43240 276 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 RFPL1O75677 317 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ENO2P09104 434 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 HIST1H2AGP0C0S8 130 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 MSL3P1P0C860 447 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 TFEBP19484 476 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 HIST1H2ADP20671 130 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 GDF5P43026 501 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 AP1S2P56377 157 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 TGFBIQ15582 683 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 LCN10Q6JVE6 187 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 VASH2Q86V25 355 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 PLD3Q8IV08 490 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 OR4N4Q8N0Y3 316 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 GALNT6Q8NCL4 622 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 MZB1Q8WU39 189 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 HNRNPLLQ8WVV9 542 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 KCNE4Q8WWG9 221 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 KIAA1191Q96A73 305 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ZUFSPQ96AP4 578 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ESAMQ96AP7 390 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 MED8Q96G25 268 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 HIST1H2AHQ96KK5 128 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 HIST1H2AJQ99878 128 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 PLCD4Q9BRC7 762 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ZPBPQ9BS86 351 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 H2AFJQ9BTM1 129 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ALG9Q9H6U8 611 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 MRPS30Q9NP92 439 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 EURLQ9NYK6 297 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ACOT9Q9Y305 439 aa13.64□□□□□ -0.23
SHKBP1-217ENST00000598558 ZFHX4Q86UP3 3567 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 LOC101059948A0A1B0GTJ6 334 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 NCF1BA6NI72 391 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF839A8K0R7 811 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 NCF1CA8MVU1 366 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 H7BY64 318 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 RAD1O60671 282 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 MED26O95402 600 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 LTA4HP09960 611 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 LIPCP11150 499 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 NCF1P14598 390 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 TYK2P29597 1187 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 CMPK1P30085 196 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 HSD17B3P37058 310 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 GCGRP47871 477 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 GLRBP48167 497 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 SERPINB9P50453 376 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ATP6V0D1P61421 351 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 SNRPNP63162 240 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 CDKL1Q00532 357 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 TLE3Q04726 772 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 PTCHD3Q3KNS1 767 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 PRAMEF13Q5VWM6 474 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 C19orf48Q6RUI8 117 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ADAMTSL2Q86TH1 951 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 GPSM1Q86YR5 675 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 CYP4X1Q8N118 509 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 OR2W6PQ8NHA6 318 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 UBLCP1Q8WVY7 318 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 RHBDF1Q96CC6 855 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 PRAP1Q96NZ9 151 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ATOH8Q96SQ7 321 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 TMEM79Q9BSE2 394 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 TRIM54Q9BYV2 358 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ULBP3Q9BZM4 244 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 VPS11Q9H270 941 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 RRAGDQ9NQL2 400 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 CCDC177Q9NQR7 707 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 STARD5Q9NSY2 213 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 PLCL2Q9UPR0 1127 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 ASB1Q9Y576 335 aa13.63□□□□□ -0.23
SHKBP1-217ENST00000598558 MAP1BP46821 2468 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 A0A087X1B8 175 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 A0A0J9YVX5 310 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 STMND1H3BQB6 276 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 HAT1O14929 419 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SCRG1O75711 98 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 FKBP9O95302 570 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SNRPAP09012 282 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 MTHFD2P13995 350 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 F8A1P23610 371 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 CD82P27701 267 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SLC26A3P40879 764 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SLC6A12P48065 614 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms