RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CTAGE9A4FU28 777 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 FITM1A5D6W6 292 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 PGRMC1O00264 195 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 DSCR3O14972 297 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 KIF5CO60282 957 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 SEMA7AO75326 666 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 USP1O94782 785 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 ATP5DP30049 168 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 OR1D4P47884 311 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 CLCN7P51798 805 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 THOC5Q13769 683 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 NKG7Q16617 165 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 EIF2S3LQ2VIR3 472 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 ZNF549Q6P9A3 640 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 COX15Q7KZN9 410 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 IQCKQ8N0W5 287 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 OR4N4Q8N0Y3 316 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 OR9A1PQ8NGU1 263 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 SSC4DQ8WTU2 575 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 SNRNP40Q96DI7 357 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 C19orf60Q96EN9 201 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 OSBPL9Q96SU4 736 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 XAB2Q9HCS7 855 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 INTS10Q9NVR2 710 aaKnown RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 SPATA7Q9P0W8 599 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 MED16Q9Y2X0 877 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 MAD1L1Q9Y6D9 718 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 USP9YO00507 2555 aaPredicted RBP19.58■□□□□ 0.72
SHMT1-209ENST00000582653 PSIP1O75475 530 aaKnown RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 MED26O95402 600 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 EIF2S1P05198 315 aaKnown RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 AIMP2Q13155 320 aaKnown RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 CUL1Q13616 776 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 C4orf17Q53FE4 359 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 ARMC3Q5W041 872 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 SHISA6Q6ZSJ9 500 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 NAT8LQ8N9F0 302 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 TTC29Q8NA56 475 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 GIMAP7Q8NHV1 300 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 TM9SF4Q92544 642 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 SIGLEC10Q96LC7 697 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 NAP1L3Q99457 506 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 PKP4Q99569 1192 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 DPH7Q9BTV6 452 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 SLC6A20Q9NP91 592 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 C20orf96Q9NUD7 363 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 MAP10Q9P2G4 905 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 ZC3H7BQ9UGR2 993 aaKnown RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 MAU2Q9Y6X3 613 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 USP9XQ93008 2570 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-209ENST00000582653 SHANK1Q9Y566 2161 aa19.57■□□□□ 0.72
SHMT1-209ENST00000582653 PHF2O75151 1096 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 CBX6O95503 412 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 SLC1A2P43004 574 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 MAGEA3P43357 314 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 MRPL49Q13405 166 aaKnown RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 TSTA3Q13630 321 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 CRB2Q5IJ48 1285 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 FBXO42Q6P3S6 717 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 Q6ZS92 163 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 ZADH2Q8N4Q0 377 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 CISD2Q8N5K1 135 aaKnown RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 ACTRT1Q8TDG2 376 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 SPSB2Q99619 263 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 ZBTB20Q9HC78 741 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 TRMT1Q9NXH9 659 aaKnown RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 VPS9D1Q9Y2B5 631 aa19.56■□□□□ 0.72
SHMT1-209ENST00000582653 PRRC2CQ9Y520 2896 aaKnown RBP19.56■□□□□ 0.72
SHMT1-209ENST00000582653 UTP20O75691 2785 aaKnown RBP19.55■□□□□ 0.72
SHMT1-209ENST00000582653 ANKRD12Q6UB98 2062 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 HYKKA2RU49 373 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 MYO1CO00159 1063 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 HAUS5O94927 633 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 ERGP11308 486 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 CMPK1P30085 196 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 LONRF1Q17RB8 773 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 RNF44Q7L0R7 432 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 PPFIBP2Q8ND30 876 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 PRR7Q8TB68 274 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 SMPDL3AQ92484 453 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 SOX17Q9H6I2 414 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-209ENST00000582653 SYNPO2LQ9H987 977 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 ASF1BQ9NVP2 202 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 CTSFQ9UBX1 484 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 PLEKHB1Q9UF11 243 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-209ENST00000582653 CDC23Q9UJX2 597 aa19.55■□□□□ 0.72
SHMT1-209ENST00000582653 NXT1Q9UKK6 140 aaKnown RBP19.55■□□□□ 0.72
SHMT1-209ENST00000582653 OR2A25A4D2G3 310 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 VSTM2BA6NLU5 285 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 SOCS6O14544 535 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 ALOX12BO75342 701 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 CATP04040 527 aaKnown RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 RPA3P35244 121 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 MPP1Q00013 466 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 HSP90AA5PQ58FG0 334 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 PRAMEF13Q5VWM6 474 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 KIRREL2Q6UWL6 708 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 CYHR1Q6ZMK1 362 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 PPIL6Q8IXY8 311 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 GPR21Q99679 349 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms