RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CD9P21926 228 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 FEN1P39748 380 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 HNMTP50135 292 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 LAPTM5Q13571 262 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 TOR1AIP1Q5JTV8 583 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 IER5LQ5T953 404 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ZNF572Q7Z3I7 529 aaPredicted RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 SCUBE1Q8IWY4 988 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 AGGF1Q8N302 714 aaeCLIP8.97□□□□□ -0.97
VPS39-205ENST00000562258 OR13J1Q8NGT2 312 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 LPGAT1Q92604 370 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 VPS33AQ96AX1 596 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 FGF22Q9HCT0 170 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 STOML1Q9UBI4 398 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 CDC14AQ9UNH5 594 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PPIEQ9UNP9 301 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 SLC28A2O43868 658 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 IGLV3-27P01718 113 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 MYF5P13349 255 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PSMA4P25789 261 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 HSD17B2P37059 387 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 CAPZA2P47755 286 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 CCT8P50990 548 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 FAM180BQ6P0A1 224 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 GOLGA7Q7Z5G4 137 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 KRT73Q86Y46 540 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 TDRPQ86YL5 185 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ATG16L2Q8NAA4 619 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 AVL9Q8NBF6 648 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 CYGBQ8WWM9 190 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PDXPQ96GD0 296 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 NR1H4Q96RI1 486 aaPredicted RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 EBF4Q9BQW3 602 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 DERL2Q9GZP9 239 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 REXO4Q9GZR2 422 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 ADNPQ9H2P0 1102 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 AQP9O43315 295 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 SLC35E2BP0CK96 405 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 CCR7P32248 378 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 MMP12P39900 470 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 RAB28P51157 221 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 OLR1P78380 273 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 SRSF11Q05519 484 aaKnown RBP8.96□□□□□ -0.97
VPS39-205ENST00000562258 ZNF155Q12901 538 aaPredicted RBP8.96□□□□□ -0.97
VPS39-205ENST00000562258 FAM214AQ32MH5 1076 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 BHLHB9Q6PI77 547 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 Q6ZNB5 142 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 HOMEZQ8IX15 550 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 FAM110BQ8TC76 370 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 STARD8Q92502 1023 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 PROX1Q92786 737 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 BTBD9Q96Q07 612 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 KCNH6Q9H252 994 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 STARD5Q9NSY2 213 aa8.96□□□□□ -0.97
VPS39-205ENST00000562258 ZCCHC3Q9NUD5 404 aaKnown RBP8.96□□□□□ -0.97
VPS39-205ENST00000562258 SOBPA7XYQ1 873 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 REM1O75628 298 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 IFNA14P01570 189 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 IDO1P14902 403 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 RBMS1P29558 406 aaKnown RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 MESP2Q0VG99 397 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 NFATC4Q14934 902 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 LSM12Q3MHD2 195 aaKnown RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 TNFAIP8L2Q6P589 184 aaPredicted RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 PAOXQ6QHF9 649 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 PLXDC1Q8IUK5 500 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 OR52B6Q8NGF0 335 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 SMPDL3BQ92485 455 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 KIAA1143Q96AT1 154 aaPredicted RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 RTP4Q96DX8 246 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 PTCHD1Q96NR3 888 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 CTPS2Q9NRF8 586 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 OXSMQ9NWU1 459 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 SCHIP1Q9P0W5 487 aaPredicted RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 TAAR2Q9P1P5 351 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 SERGEFQ9UGK8 458 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 LEF1Q9UJU2 399 aaPredicted RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 SH3GLB1Q9Y371 365 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 PEX12O00623 359 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 GABRG2P18507 467 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 ZC3H12BQ5HYM0 836 aaKnown RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 MANEALQ5VSG8 457 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 CYP4V2Q6ZWL3 525 aaPredicted RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 GALNT10Q86SR1 603 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 ACVR1CQ8NER5 493 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 OR2I1PQ8NGU4 316 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 OR5AK3PQ8NH89 298 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 PEX13Q92968 403 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 CAMK1GQ96NX5 476 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 F2RL3Q96RI0 385 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 TBC1D10AQ9BXI6 508 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 NOP53Q9NZM5 478 aaKnown RBP8.96□□□□□ -0.98
VPS39-205ENST00000562258 CPNE7Q9UBL6 633 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 WNT16Q9UBV4 365 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 PISDQ9UG56 409 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 LGALS13Q9UHV8 139 aa8.96□□□□□ -0.98
VPS39-205ENST00000562258 POLR1CO15160 346 aaPredicted RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 RFPL1O75677 317 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CCNYL3P0C7X3 344 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms