RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MRPL49Q13405 166 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 CUL1Q13616 776 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 EIF2S3LQ2VIR3 472 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 FHL5Q5TD97 284 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 YOD1Q5VVQ6 348 aaPredicted RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 ZNF549Q6P9A3 640 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 CCDC137Q6PK04 289 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 KIRREL2Q6UWL6 708 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 HPS6Q86YV9 775 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 REXO1L1PQ8IX06 675 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 PARP9Q8IXQ6 854 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 AGGF1Q8N302 714 aaeCLIP9.77□□□□□ -0.85
LDLR-214ENST00000560628 PPFIBP2Q8ND30 876 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MCUQ8NE86 351 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 COG1Q8WTW3 980 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 SMPDL3AQ92484 453 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 FKBP10Q96AY3 582 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 SERPINB12Q96P63 405 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 PSMG3-AS1Q96PY0 264 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 SPSB2Q99619 263 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MESP1Q9BRJ9 268 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 WDR54Q9H977 334 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ZNF304Q9HCX3 659 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 SLC6A20Q9NP91 592 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MRPS30Q9NP92 439 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 C20orf96Q9NUD7 363 aaPredicted RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 INTS10Q9NVR2 710 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 SPATA7Q9P0W8 599 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 NEU2Q9Y3R4 380 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 KLK4Q9Y5K2 254 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 FAM169AQ9Y6X4 670 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 UBR5O95071 2799 aaPredicted RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 OR2A25A4D2G3 310 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 MYO1CO00159 1063 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SOCS6O14544 535 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 FFAR3O14843 346 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 GPR42O15529 346 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SEMA7AO75326 666 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 PSIP1O75475 530 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 HAUS5O94927 633 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 AGFG2O95081 481 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SYF2O95926 243 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 CATP04040 527 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 ERVK-10P10266 1014 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 ATP5DP30049 168 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 GLRBP48167 497 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 PNLIPRP1P54315 467 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SOX8P57073 446 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 AIMP2Q13155 320 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 RBBP7Q16576 425 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 HIF1AQ16665 826 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 CYP1B1Q16678 543 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 TTLL9Q3SXZ7 439 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 PRAMEF13Q5VWM6 474 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 CYHR1Q6ZMK1 362 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 RNF44Q7L0R7 432 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 LAPTM4BQ86VI4 370 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SLC35F6Q8N357 371 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 ZADH2Q8N4Q0 377 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 GIMAP7Q8NHV1 300 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 PRR7Q8TB68 274 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SNRNP40Q96DI7 357 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 CABS1Q96KC9 395 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SIGLEC10Q96LC7 697 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 ZFYVE21Q9BQ24 234 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 PLCD4Q9BRC7 762 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 YIPF2Q9BWQ6 316 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SLC26A1Q9H2B4 701 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 CCDC68Q9H2F9 335 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 SYNPO2LQ9H987 977 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 LRRC4CQ9HCJ2 640 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 XAB2Q9HCS7 855 aaKnown RBP9.76□□□□□ -0.85
LDLR-214ENST00000560628 FAM114A2Q9NRY5 505 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 ASF1BQ9NVP2 202 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 TAC3Q9UHF0 121 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 B3GNT3Q9Y2A9 372 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 VPS9D1Q9Y2B5 631 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 MED16Q9Y2X0 877 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 HS3ST3B1Q9Y662 390 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 ANKRD12Q6UB98 2062 aa9.76□□□□□ -0.85
LDLR-214ENST00000560628 IGKV1-8A0A0C4DH67 115 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 VSTM2BA6NLU5 285 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 PGRMC1O00264 195 aaKnown RBP9.75□□□□□ -0.85
LDLR-214ENST00000560628 IPO13O94829 963 aaKnown RBP9.75□□□□□ -0.85
LDLR-214ENST00000560628 SLC16A8O95907 504 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 ZGLP1P0C6A0 271 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 ERGP11308 486 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 GP1BBP13224 206 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 SLC1A2P43004 574 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 MPP1Q00013 466 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 OCA2Q04671 838 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 PRDX1Q06830 199 aaKnown RBP9.75□□□□□ -0.85
LDLR-214ENST00000560628 KLC1Q07866 573 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 ARHGAP19Q14CB8 494 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 LONRF1Q17RB8 773 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 MUM1Q2TAK8 710 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 PRTGQ2VWP7 1150 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 HSP90AA5PQ58FG0 334 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 VWA2Q5GFL6 755 aa9.75□□□□□ -0.85
LDLR-214ENST00000560628 ARMC3Q5W041 872 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms