RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 BIRC8Q96P09 236 aa16.76■□□□□ 0.27
COL7A1-206ENST00000466591 SLC6A20Q9NP91 592 aa16.76■□□□□ 0.27
COL7A1-206ENST00000466591 AGPAT4Q9NRZ5 378 aa16.76■□□□□ 0.27
COL7A1-206ENST00000466591 CTSFQ9UBX1 484 aa16.76■□□□□ 0.27
COL7A1-206ENST00000466591 ZNF282Q9UDV7 671 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-206ENST00000466591 COPG1Q9Y678 874 aaKnown RBP16.76■□□□□ 0.27
COL7A1-206ENST00000466591 TCP11X1B4DZS4 312 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 MASP2O00187 686 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 CTSVO60911 334 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 PHF2O75151 1096 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 CNOT3O75175 753 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 ALOX12BO75342 701 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 CXCR2P25025 360 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 ADARP55265 1226 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 MRPL49Q13405 166 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 FASTKQ14296 549 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 KCNJ11Q14654 390 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 EIF2S3LQ2VIR3 472 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 PLEKHN1Q494U1 663 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 ACSBG2Q5FVE4 666 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 FRMPD2BQ6IN97 320 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 CCDC137Q6PK04 289 aaKnown RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 PALM2Q8IXS6 379 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 Q8NA96 180 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 OR2A1Q8NGT9 310 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 CALML6Q8TD86 181 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 FBXO6Q9NRD1 293 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 C20orf96Q9NUD7 363 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-206ENST00000466591 TAC3Q9UHF0 121 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 JRKLQ9Y4A0 524 aa16.75■□□□□ 0.27
COL7A1-206ENST00000466591 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-206ENST00000466591 FAM237BA0A1B0GVD1 139 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 ZBTB14O43829 449 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 MLNP12872 115 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 ACPPP15309 386 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 ARNTP27540 789 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 PNLIPRP1P54315 467 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 ARHGAP19Q14CB8 494 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 NR6A1Q15406 480 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 PPP1R7Q15435 360 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 C4orf17Q53FE4 359 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 RNF44Q7L0R7 432 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 CSNK1A1LQ8N752 337 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 THOC3Q96J01 351 aaKnown RBP16.74■□□□□ 0.27
COL7A1-206ENST00000466591 SLC26A1Q9H2B4 701 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 ZNF552Q9H707 407 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-206ENST00000466591 SLC22A11Q9NSA0 550 aa16.74■□□□□ 0.27
COL7A1-206ENST00000466591 DOPEY2Q9Y3R5 2298 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 LOC105369274A0A096LPK9 316 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 LOC102723532A0A0G2JNH3 316 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CLEC18AA5D8T8 446 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CYSRT1A8MQ03 144 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 ARHGEF33A8MVX0 844 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 SMAPO00193 183 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 PGRMC1O00264 195 aaKnown RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 MATN4O95460 622 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CTBP1Q13363 440 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CUL1Q13616 776 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 LONRF1Q17RB8 773 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 ANKRD22Q5VYY1 191 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 IGFL3Q6UXB1 125 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CLEC18BQ6UXF7 455 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 REXO1L1PQ8IX06 675 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 OR4N4Q8N0Y3 316 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CLEC18CQ8NCF0 446 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 DNAJB14Q8TBM8 379 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 STT3BQ8TCJ2 826 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 SNRNP40Q96DI7 357 aaKnown RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 C19orf60Q96EN9 201 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 MS4A14Q96JA4 679 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 SPSB2Q99619 263 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 EBNA1BP2Q99848 306 aaKnown RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 WDR77Q9BQA1 342 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 LHPPQ9H008 270 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 ASF1BQ9NVP2 202 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 CUEDC1Q9NWM3 386 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-206ENST00000466591 TRPC4Q9UBN4 977 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 C3orf18Q9UK00 162 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 HS3ST3B1Q9Y662 390 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 NBASA2RRP1 2371 aa16.73■□□□□ 0.27
COL7A1-206ENST00000466591 MED13Q9UHV7 2174 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 FITM1A5D6W6 292 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 H0YGG7 62 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 MYO1CO00159 1063 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 TXNDC9O14530 226 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 SOCS6O14544 535 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 PRICKLE3O43900 615 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 KIF5CO60282 957 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 PSIP1O75475 530 aaKnown RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 HEXBP07686 556 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 ZGLP1P0C6A0 271 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 ENO3P13929 434 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 COILP38432 576 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 ARF3P61204 181 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 CCZ1BP86790 482 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 CCZ1P86791 482 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-206ENST00000466591 KLC1Q07866 573 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 CDC16Q13042 620 aa16.72■□□□□ 0.27
COL7A1-206ENST00000466591 HIF1AQ16665 826 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms