RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CHN1P15882 459 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 RPA3P35244 121 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 MAPK9P45984 424 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 SLC18A1P54219 525 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 EPHA4P54764 986 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 GFERP55789 205 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ACSBG2Q5FVE4 666 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 TECRLQ5HYJ1 363 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 TMEM207Q6UWW9 146 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 NAPRTQ6XQN6 538 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 PIWIL4Q7Z3Z4 852 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF547Q8IVP9 402 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 PLD6Q8N2A8 252 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 SPATA6LQ8N4H0 392 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ARMC2Q8NEN0 867 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 OR2L2Q8NH16 312 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ANKRD49Q8WVL7 239 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 SREK1Q8WXA9 508 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 STARD8Q92502 1023 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 EXT2Q93063 718 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 RNF31Q96EP0 1072 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 UBXN10Q96LJ8 280 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 PAIP2Q9BPZ3 127 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ZPBPQ9BS86 351 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 OSGEPL1Q9H4B0 414 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 ALG9Q9H6U8 611 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 MLXIPLQ9NP71 852 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 INTS9Q9NV88 658 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 FAM53CQ9NYF3 392 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 OGFRQ9NZT2 677 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 GALPQ9UBC7 116 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 RNF112Q9ULX5 631 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 RUVBL2Q9Y230 463 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 DNAJC16Q9Y2G8 782 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 PLLPQ9Y342 182 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 DNMT3AQ9Y6K1 912 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 MN1Q10571 1320 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 C17orf113A0A1B0GUU1 675 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SUPT3HB4E1H0 165 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 K7EM74 188 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 ZBTB14O43829 449 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SUPT3HO75486 399 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 TSPAN12O95859 305 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 PROCP04070 461 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 S100BP04271 92 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 FURINP09958 794 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SLC35G4P0C7Q5 338 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 MPC1LP0DKB6 136 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF28P17035 718 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 TAC1P20366 129 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 STAT5AP42229 794 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 PREPP48147 710 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 PPM1FP49593 454 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 UBE2IP63279 158 aaKnown RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 DLG1Q12959 904 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 RPA4Q13156 261 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SP140Q13342 867 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 NFE2L1Q14494 772 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 GBX1Q14549 363 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 ACAP2Q15057 778 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 C16orf46Q6P387 395 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 NEK10Q6ZWH5 1172 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SLC9B2Q86UD5 537 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 RDH11Q8TC12 318 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 EEF1AKMT1Q8WVE0 214 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 APOBEC4Q8WW27 367 aaKnown RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 KIAA1143Q96AT1 154 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 FOPNLQ96NB1 174 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 MRPL57Q9BQC6 102 aaKnown RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 PRDM8Q9NQV8 689 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF358Q9NW07 568 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 TMEM216Q9P0N5 145 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 SCHIP1Q9P0W5 487 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-208ENST00000437607 CPNE7Q9UBL6 633 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 HIVEP3Q5T1R4 2406 aa11.76□□□□□ -0.53
PTPRF-208ENST00000437607 FER1L5A0AVI2 2057 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 UNC79Q9P2D8 2635 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 ESPL1Q14674 2120 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SLC5A10A0PJK1 596 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 LILRA5A6NI73 299 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SYCE1LA8MT33 242 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 IFRD1O00458 451 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 POLR1CO15160 346 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SNX2O60749 519 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 KCNJ13O60928 360 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 KERAO60938 352 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SMIM24O75264 130 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 GPC4O75487 556 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 C9P02748 559 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 C8GP07360 202 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 ANKRD34CP0C6C1 535 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 MYL2P10916 166 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 NEFHP12036 1026 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 TCN2P20062 427 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CYP2A7P20853 494 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 DMPKQ09013 629 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 MAP7Q14244 749 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 TSNQ15631 228 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 C11orf96Q7Z7L8 435 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms