RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TMEM135Q86UB9 458 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CRYGNQ8WXF5 182 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 KCNC2Q96PR1 638 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SLC35A5Q9BS91 424 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CCDC106Q9BWC9 280 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CALML5Q9NZT1 146 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 RBM47A0AV96 593 aaKnown RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 TMEM88BA6NKF7 163 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 STX16O14662 325 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 HTRA2O43464 458 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CREG1O75629 220 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 AGTR2P50052 363 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ALDH3A2P51648 485 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SOX4Q06945 474 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 GPR17Q13304 367 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 GDPD4Q6W3E5 623 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 IPCEF1Q8WWN9 437 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 DCSTAMPQ9H295 470 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 AKAP7Q9P0M2 348 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 MAN2B2Q9Y2E5 1009 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 A0A0D9SEW6 157 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 FABP12A6NFH5 140 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 FAM189A1O60320 539 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SNAI1O95863 264 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF252P-AS1Q0IIN9 211 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 C6orf136Q5SQH8 315 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 PEX5LQ8IYB4 626 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CPA6Q8N4T0 437 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 KCNJ9Q92806 393 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 TSGA13Q96PP4 275 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 IL1RAPQ9NPH3 570 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 PRAMEF11O60813 436 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 NOS1APO75052 506 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 CRISP3P54108 245 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ARSIQ5FYB1 569 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 COLEC12Q5KU26 742 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SLC25A24Q6NUK1 477 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 OR10H4Q8NGA5 316 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ARMC5Q96C12 935 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 C12orf43Q96C57 262 aaKnown RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ANKRA2Q9H9E1 313 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 TPT1P8Q9HAU6 139 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SNX7Q9UNH6 387 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 SPIN1Q9Y657 262 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ABCC6O95255 1503 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 SLC35E2BP0CK96 405 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 TFPIP10646 304 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 GMFBP60983 142 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 PLEKHG6Q3KR16 790 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 FRRS1Q6ZNA5 592 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 C5orf34Q96MH7 638 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 YIPF4Q9BSR8 244 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 C16orf70Q9BSU1 422 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 DPEP2Q9H4A9 486 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 CFL2Q9Y281 166 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 RNF11Q9Y3C5 154 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 MYOCOSA0A1B0GUC4 107 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 LOC100130705A0A1B0GUX0 176 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 PITPNM1O00562 1244 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 NOVP48745 357 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 EMX2Q04743 252 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF792Q3KQV3 632 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 AKIRIN2Q53H80 203 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF311Q5JNZ3 666 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 VITQ6UXI7 678 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 SLC22A17Q8WUG5 538 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 NSUN5Q96P11 429 aaKnown RBP13.67□□□□□ -0.22
CPSF1-212ENST00000616140 SMURF2Q9HAU4 748 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 TMEM248Q9NWD8 314 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 SPATA7Q9P0W8 599 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 DHRS7Q9Y394 339 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 RPL36Q9Y3U8 105 aaKnown RBP13.67□□□□□ -0.22
CPSF1-212ENST00000616140 RGPD8O14715 1765 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-212ENST00000616140 FAM172BPA6NC97 362 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 LRRC72A6NJI9 287 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 ATP6V1G1O75348 118 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 MATN4O95460 622 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 DNAJB13P59910 316 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 CEACAM7Q14002 265 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 E2F2Q14209 437 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 MEP1AQ16819 746 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 TPRG1Q6ZUI0 275 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF598Q86UK7 904 aaKnown RBP13.67□□□□□ -0.22
CPSF1-212ENST00000616140 TP53INP2Q8IXH6 220 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 SLAIN1Q8ND83 568 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 OR4C6Q8NH72 309 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 HTATIP2Q9BUP3 242 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 PCBD2Q9H0N5 130 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 RPF2Q9H7B2 306 aaKnown RBP13.67□□□□□ -0.22
CPSF1-212ENST00000616140 NECTIN3Q9NQS3 549 aa13.67□□□□□ -0.22
CPSF1-212ENST00000616140 MANBAO00462 879 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CSTF2P33240 577 aaKnown RBP eCLIP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ACADVLP49748 655 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 STXBP1P61764 594 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 PTGR1Q14914 329 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 LCN1P1Q5VSP4 162 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 LRRC70Q7Z2Q7 622 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 RANBP3LQ86VV4 465 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TMCO6Q96DC7 493 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 HSPBAP1Q96EW2 488 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms