RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ZNF835Q9Y2P0 537 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 AKAP6Q13023 2319 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 A0A0J9YY10 115 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 TMEM200CA6NKL6 621 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 VSTM2BA6NLU5 285 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 FAM227AF5H4B4 570 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 IFRD1O00458 451 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 USP1O94782 785 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 PRAMEF1O95521 474 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 EPOP01588 193 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 CHRM5P08912 532 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ACPPP15309 386 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ST13P50502 369 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 KLC1Q07866 573 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 SLC1A5Q15758 541 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ANKRD20A2Q5SQ80 823 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ANKRD20A1Q5TYW2 823 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ANKRD20A3Q5VUR7 823 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ITPRIPL1Q6GPH6 555 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 Q71RC1 249 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 LAPTM4BQ86VI4 370 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 LRRC8AQ8IWT6 810 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 LMNTD1Q8N9Z9 388 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 IPMKQ8NFU5 416 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 OR5AR1Q8NGP9 310 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 DLG3Q92796 817 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 MAGED4Q96JG8 741 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 MDFIQ99750 246 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 FERMT1Q9BQL6 677 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 CHRNA10Q9GZZ6 450 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 FAM96AQ9H5X1 160 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 ASB8Q9H765 288 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 MVB12BQ9H7P6 319 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 COG4Q9H9E3 785 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 PLAGL1Q9UM63 463 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 MRPS2Q9Y399 296 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 PKP3Q9Y446 797 aa13.13□□□□□ -0.31
SHKBP1-208ENST00000595726 FBN1P35555 2871 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 NSG1A0A0A6YYJ2 146 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 KLHL33A6NCF5 533 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 GOLGA6L9A6NEM1 432 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 DSCR3O14972 297 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 PRAMEF2O60811 474 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 UQCRHP07919 91 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 PIM1P11309 404 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 PSMB4P28070 264 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 PEBP1P30086 187 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 GRIA3P42263 894 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 NSG1P42857 185 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 TNNT3P45378 269 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 ARSFP54793 590 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 PPP2R2AP63151 447 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 CCZ1BP86790 482 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 CCZ1P86791 482 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 FOXD4Q12950 439 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 ATG9BQ674R7 924 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 DARS2Q6PI48 645 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 Q6ZPB1 254 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 ARHGEF18Q6ZSZ5 1173 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 CA5BP1Q8WTZ4 195 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 SDCCAG3Q96C92 435 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 DCUN1D1Q96GG9 259 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 SPATA13Q96N96 652 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 FSD1LQ9BXM9 530 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 CUTCQ9NTM9 273 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 CCM2LQ9NUG4 571 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 C3orf18Q9UK00 162 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 R3HDM2Q9Y2K5 976 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 ARL5AQ9Y689 179 aa13.12□□□□□ -0.31
SHKBP1-208ENST00000595726 TCRBV7S2A1N4TA0A589 114 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 ISM1B1AKI9 464 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 MAP2K7O14733 419 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 STX7O15400 261 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 ZNF189O75820 626 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 ANXA9O76027 345 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 SRP72O76094 671 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 STK10O94804 968 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 MED26O95402 600 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 SERPINA7P05543 415 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 PTMAP06454 111 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 CCDC175P0C221 793 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 COX6A1P12074 109 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 MAGP20916 626 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 PRLHRP49683 370 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 GEMP55040 296 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 EEF1A2Q05639 463 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 OLIG2Q13516 323 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 LONRF1Q17RB8 773 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 ZNF658BQ4V348 819 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 HIBCHQ6NVY1 386 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 ZNF662Q6ZS27 426 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 NDUFAF7Q7L592 441 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 TMEM200AQ86VY9 491 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 DNAAF3Q8N9W5 541 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 SUN3Q8TAQ9 357 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 STT3BQ8TCJ2 826 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 AGAP11Q8TF27 550 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 NANOS1Q8WY41 292 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 VPS50Q96JG6 964 aa13.11□□□□□ -0.31
SHKBP1-208ENST00000595726 FICDQ9BVA6 458 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms