RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ASB11Q8WXH4 323 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 ZUFSPQ96AP4 578 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 DPH2Q9BQC3 489 aaPredicted RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 FAM117AQ9C073 453 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 TAS2R13Q9NYV9 303 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 SRPK3Q9UPE1 567 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 TARM1B6A8C7 271 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 EIF3FO00303 357 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 RAD51CO43502 376 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 SYF2O95926 243 aaKnown RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 NFATC3Q12968 1075 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 TSTA3Q13630 321 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 ARHGAP19Q14CB8 494 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 RBM20Q5T481 1227 aaKnown RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 C1orf189Q5VU69 101 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 ZNF385CQ66K41 422 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 RHBDD2Q6NTF9 364 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 FAM198BQ6UWH4 519 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 CYHR1Q6ZMK1 362 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 GALNT7Q86SF2 657 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 FBXO15Q8NCQ5 510 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-206ENST00000579558 FBXO36Q8NEA4 188 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 SMPDL3AQ92484 453 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 ERP44Q9BS26 406 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 NDC1Q9BTX1 674 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 ACAT2Q9BWD1 397 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 NLNQ9BYT8 704 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 DPH5Q9H2P9 285 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 TXLNGQ9NUQ3 528 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 KCNMB2Q9Y691 235 aa22.95■■□□□ 1.26
SHMT1-206ENST00000579558 ZNF839A8K0R7 811 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 C9J4A7 227 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 GFYI3L273 518 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 ZBTB14O43829 449 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 CAPN1P07384 714 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 CMPK1P30085 196 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 RPA3P35244 121 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 HSD17B2P37059 387 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 SKIV2L2P42285 1042 aaKnown RBP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 RGS4P49798 205 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 PNLIPRP1P54315 467 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 TIAL1Q01085 375 aaKnown RBP eCLIP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 CALCOCO2Q13137 446 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 FASTKD3Q14CZ7 662 aaKnown RBP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 UGT8Q16880 541 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 LRRC8EQ6NSJ5 796 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 SUSD1Q6UWL2 747 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 UBE2R2Q712K3 238 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 PROKR1Q8TCW9 393 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 DHCR7Q9UBM7 475 aaKnown RBP22.94■■□□□ 1.26
SHMT1-206ENST00000579558 TUBD1Q9UJT1 453 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 SNX7Q9UNH6 387 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 MAN2B2Q9Y2E5 1009 aa22.94■■□□□ 1.26
SHMT1-206ENST00000579558 B8ZZF3 427 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 E7ESA3 106 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 SLC16A8O95907 504 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 CDKN2DP55273 166 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 IL10RAQ13651 578 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 FRG1Q14331 258 aaKnown RBP22.93■■□□□ 1.26
SHMT1-206ENST00000579558 NAA25Q14CX7 972 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 NCF4Q15080 339 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 ZNF605Q86T29 641 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 GPATCH11Q8N954 259 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 EEF1AKMT1Q8WVE0 214 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 GBP5Q96PP8 586 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 SELENOSQ9BQE4 189 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 SLC25A18Q9H1K4 315 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 STARD5Q9NSY2 213 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 WHRNQ9P202 907 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 TCFL5Q9UL49 500 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 KLK4Q9Y5K2 254 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 SEC16AO15027 2179 aa22.93■■□□□ 1.26
SHMT1-206ENST00000579558 HELZ2Q9BYK8 2649 aaKnown RBP22.93■■□□□ 1.26
SHMT1-206ENST00000579558 CTSVO60911 334 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 ATXN8OSP0DMR3 200 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 PAQR3Q6TCH7 311 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 ZBED8Q8IZ13 594 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 PPFIBP2Q8ND30 876 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 ZNF480Q8WV37 535 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 DLG3Q92796 817 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 C17orf62Q9BQA9 187 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 DPH7Q9BTV6 452 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 MRPS30Q9NP92 439 aaKnown RBP22.92■■□□□ 1.26
SHMT1-206ENST00000579558 ZFATQ9P243 1243 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 CORO1CQ9ULV4 474 aaPredicted RBP22.92■■□□□ 1.26
SHMT1-206ENST00000579558 FER1L5A0AVI2 2057 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 PCM1Q15154 2024 aa22.92■■□□□ 1.26
SHMT1-206ENST00000579558 YBX1P67809 324 aaKnown RBP22.91■■□□□ 1.26
SHMT1-206ENST00000579558 DCDP81605 110 aaKnown RBP22.91■■□□□ 1.26
SHMT1-206ENST00000579558 NFKB2Q00653 900 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 MGAT5Q09328 741 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 PDAP1Q13442 181 aaKnown RBP22.91■■□□□ 1.26
SHMT1-206ENST00000579558 TCTE1Q5JU00 501 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 HECTD2Q5U5R9 776 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 FAM69BQ5VUD6 431 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 MLIPQ5VWP3 458 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 MYO1HQ8N1T3 1032 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 THAP4Q8WY91 577 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 SLC6A20Q9NP91 592 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 ABCF3Q9NUQ8 709 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms