RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MOCS1Q9NZB8 636 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 GRHL1Q9NZI5 618 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 SRPK3Q9UPE1 567 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 VWA7Q9Y334 891 aa12.89□□□□□ -0.35
CLK3-213ENST00000563842 SLC16A5O15375 505 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 ZNF749O43361 778 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 SYF2O95926 243 aaKnown RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 CD63P08962 238 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 HIST1H2AGP0C0S8 130 aaPredicted RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 HIST1H2ADP20671 130 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 RPA3P35244 121 aaPredicted RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 GABRA4P48169 554 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 IL2P60568 153 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 CDC20Q12834 499 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 GPS2Q13227 327 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 SP140Q13342 867 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 FASTKD3Q14CZ7 662 aaKnown RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 TCTE1Q5JU00 501 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 RBM20Q5T481 1227 aaKnown RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 HECTD2Q5U5R9 776 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 CEP128Q6ZU80 1094 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 CYS1Q717R9 158 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 STRA8Q7Z7C7 330 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 SYTL1Q8IYJ3 562 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 OR2L3Q8NG85 312 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 OR2A1Q8NGT9 310 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 CT55Q8WUE5 264 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 EEF1AKMT1Q8WVE0 214 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 DLG3Q92796 817 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 HIST1H2AHQ96KK5 128 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 PKP4Q99569 1192 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 HIST1H2AJQ99878 128 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 H2AFJQ9BTM1 129 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 TRIM54Q9BYV2 358 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 TXLNGQ9NUQ3 528 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 EURLQ9NYK6 297 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 TXNDC16Q9P2K2 825 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 ANKMY1Q9P2S6 941 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 FARSAQ9Y285 508 aaKnown RBP12.88□□□□□ -0.35
CLK3-213ENST00000563842 KLK4Q9Y5K2 254 aa12.88□□□□□ -0.35
CLK3-213ENST00000563842 LOC400499M0QZD8 3231 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 TERTO14746 1132 aaKnown RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 ZSCAN9O15535 394 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 SRPX2O60687 465 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 CREG1O75629 220 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 RAB40ALP0C0E4 278 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 PTPN4P29074 926 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 GRIA3P42263 894 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 ARSFP54793 590 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 CDKN2DP55273 166 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 CYP4F2P78329 520 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 ABATP80404 500 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 TSTA3Q13630 321 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 FASTKQ14296 549 aaKnown RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 DEFB110Q30KQ9 67 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 YOD1Q5VVQ6 348 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 RHBDD2Q6NTF9 364 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 C16orf46Q6P387 395 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 BORAQ6PGQ7 559 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 PAQR3Q6TCH7 311 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 ZNF517Q6ZMY9 492 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 PIWIL4Q7Z3Z4 852 aaKnown RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 MCATQ8IVS2 390 aaKnown RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 KIF18AQ8NI77 898 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 FBXO25Q8TCJ0 367 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 PROKR1Q8TCW9 393 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 EXTL1Q92935 676 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 RNF31Q96EP0 1072 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 VPS39Q96JC1 886 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 CCDC138Q96M89 665 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 BBC3Q96PG8 261 aaPredicted RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 MIPEPQ99797 713 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 NDC1Q9BTX1 674 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 PARVBQ9HBI1 364 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 MRPS30Q9NP92 439 aaKnown RBP12.87□□□□□ -0.35
CLK3-213ENST00000563842 PCMTD2Q9NV79 361 aa12.87□□□□□ -0.35
CLK3-213ENST00000563842 PIEZO2Q9H5I5 2752 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 A0A1W2PPV9 198 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 C9J4A7 227 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 E7ENX8 843 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 NKX2-8O15522 239 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 ZIC2O95409 532 aaPredicted RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 SLC16A8O95907 504 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 PRKAR1AP10644 381 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FDXRP22570 491 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 F8A1P23610 371 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 SSTR1P30872 391 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 RORAP35398 523 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 CCR10P46092 362 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 SLC12A2P55011 1212 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 TIAL1Q01085 375 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLK3-213ENST00000563842 TAP2Q03519 686 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 PRDX1Q06830 199 aaKnown RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 TBR1Q16650 682 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FAM214AQ32MH5 1076 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 THEMIS2Q5TEJ8 643 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 PRAMEF17Q5VTA0 474 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FCRL6Q6DN72 434 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms