RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 AGTRAPQ6RW13 159 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 UNQ6494/PRO21346Q6UXR6 183 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 FRA10AC1Q70Z53 315 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 PPP1R3BQ86XI6 285 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 GPSM1Q86YR5 675 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 LRRC56Q8IYG6 542 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 C19orf47Q8N9M1 422 aaKnown RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 KDF1Q8NAX2 398 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 OR2L3Q8NG85 312 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 JPH3Q8WXH2 748 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 FGF11Q92914 225 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 TMEM121BQ9BXQ6 578 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 CAB39LQ9H9S4 337 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 ASCL3Q9NQ33 180 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 SLC39A1Q9NY26 324 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 SPHK1Q9NYA1 384 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 STOX2Q9P2F5 926 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 SERTAD3Q9UJW9 196 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 PLAGL1Q9UM63 463 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 SNX7Q9UNH6 387 aa13.2□□□□□ -0.3
SHMT2-234ENST00000557703 URB1O60287 2271 aaKnown RBP13.2□□□□□ -0.3
SHMT2-234ENST00000557703 A0A1W2PPV9 198 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SLC9B1P1A6NJY1 282 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 TRIM49D1C9J1S8 452 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 CASC3O15234 703 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 KIF1CO43896 1103 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 GSTA1P08263 222 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SPINK2P20155 84 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 MPSTP25325 297 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SEPHS1P49903 392 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 CLDN6P56747 220 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 MAP7Q14244 749 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 TGFBIQ15582 683 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 TSNQ15631 228 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 PHKG1Q16816 387 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 CCSMST1Q4G0I0 132 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 ICE2Q659A1 982 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 LCTLQ6UWM7 567 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 ISCA2Q86U28 154 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 FAM129CQ86XR2 697 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 GSPT2Q8IYD1 628 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 KLHDC8AQ8IYD2 350 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 OR56A3Q8NH54 315 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SNIP1Q8TAD8 396 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 HNRNPLLQ8WVV9 542 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 MRRFQ96E11 262 aaKnown RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 IL17FQ96PD4 163 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 TMEM109Q9BVC6 243 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SGPP1Q9BX95 441 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 FGF21Q9NSA1 209 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 SOHLH2Q9NX45 425 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 PISDQ9UG56 409 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 ADAMTS6Q9UKP5 1117 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 RARRES3Q9UL19 164 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 AP1M2Q9Y6Q5 423 aa13.19□□□□□ -0.3
SHMT2-234ENST00000557703 ANKRD11Q6UB99 2663 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-234ENST00000557703 CDC7O00311 574 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 TXNDC9O14530 226 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 BRINP1O60477 761 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 KERAO60938 352 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 MT-ND3P03897 115 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 S100BP04271 92 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 CAPNS1P04632 268 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 HBQ1P09105 142 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 ST6GAL1P15907 406 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 GCAP28676 217 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 PEBP1P30086 187 aaKnown RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 PCBP4P57723 403 aaKnown RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 IFFO1Q0D2I5 559 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 TUBB3Q13509 450 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 ZNF460Q14592 562 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 TCTE1Q5JU00 501 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 THEMIS2Q5TEJ8 643 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 YOD1Q5VVQ6 348 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 FIGLAQ6QHK4 219 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 CMC1Q7Z7K0 106 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 PDPRQ8NCN5 879 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 UHMK1Q8TAS1 419 aaKnown RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 N4BP2L2Q92802 583 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 THAP11Q96EK4 314 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 DPH1Q9BZG8 443 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 PITHD1Q9GZP4 211 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 MRPS30Q9NP92 439 aaKnown RBP13.18□□□□□ -0.3
SHMT2-234ENST00000557703 IGSF5Q9NSI5 407 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 TMEM184CQ9NVA4 438 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 OCIAD1Q9NX40 245 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 RNF112Q9ULX5 631 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 PCDHB3Q9Y5E6 796 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 KCNE2Q9Y6J6 123 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 IGF2RP11717 2491 aa13.18□□□□□ -0.3
SHMT2-234ENST00000557703 HEATR5BQ9P2D3 2071 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 A0A1W2PNU3 283 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-234ENST00000557703 OR2A25A4D2G3 310 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 STMND1H3BQB6 276 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 CCL4P13236 92 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 EZRP15311 586 aaKnown RBP13.17□□□□□ -0.3
SHMT2-234ENST00000557703 TFEBP19484 476 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 SLC5A2P31639 672 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 GRIA3P42263 894 aa13.17□□□□□ -0.3
SHMT2-234ENST00000557703 PPP1CAP62136 330 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms