RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ILF3Q12906 894 aaKnown RBP eCLIP7.2□□□□□ -1.26
CD44-228ENST00000528455 BOP1Q14137 746 aaKnown RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 KIF19Q2TAC6 998 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 UAP1L1Q3KQV9 507 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SYTL3Q4VX76 610 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 N4BP2L1Q5TBK1 243 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 METTL2BQ6P1Q9 378 aaKnown RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 IYDQ6PHW0 289 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 OGFOD3Q6PK18 319 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PAOXQ6QHF9 649 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 CRTC3Q6UUV7 619 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 UNC5DQ6UXZ4 953 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 NAPRTQ6XQN6 538 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 FAM83HQ6ZRV2 1179 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 CDHR3Q6ZTQ4 885 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ADAMTSL2Q86TH1 951 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 GKN2Q86XP6 184 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 GPSM1Q86YR5 675 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 VRK3Q8IV63 474 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SLC22A9Q8IVM8 553 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 TBC1D21Q8IYX1 336 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PHACTR4Q8IZ21 702 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SPATA6LQ8N4H0 392 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 TFGQ92734 400 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 LINGO1Q96FE5 620 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 HIST1H2AHQ96KK5 128 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ATOH8Q96SQ7 321 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ELF4Q99607 663 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 HIST1H2AJQ99878 128 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 H2AFJQ9BTM1 129 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 MRPL46Q9H2W6 279 aaKnown RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 CAPN10Q9HC96 672 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 TMEM9BQ9NQ34 198 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 C1GALT1Q9NS00 363 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 DNAJC28Q9NX36 388 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 NKIRAS1Q9NYS0 192 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 OGFRQ9NZT2 677 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 POLG2Q9UHN1 485 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 MID2Q9UJV3 735 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 POLR3KQ9Y2Y1 108 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 SNX11Q9Y5W9 270 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ST14Q9Y5Y6 855 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 HEBP2Q9Y5Z4 205 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 COLEC10Q9Y6Z7 277 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 CACNA1EQ15878 2313 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 KIR2DS5A0A0G2JLQ3 304 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 A0A0G2JNG1 304 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 A0A1B0GTQ1 180 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 A0A1B0GVT2 93 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 LMO7DNF2Z398 122 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 G3V2L1 256 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 H3BQF6 201 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 KIR2DS3K7RE56 304 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 CDC7O00311 574 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 BTN3A1O00481 513 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SCAMP1O15126 338 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 YY2O15391 372 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 YKT6O15498 198 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 KERAO60938 352 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PIAS2O75928 621 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 C1orf105O95561 183 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 CFIP05156 583 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ADRB1P08588 477 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SBK3P0C264 359 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SLC35G4P0C7Q5 338 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ACP5P13686 325 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 F3P13726 295 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 MTHFD2P13995 350 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 NR1D1P20393 614 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 IMPDH1P20839 514 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 CYP2A7P20853 494 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ATP5F1P24539 256 aaPredicted RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 GGT5P36269 586 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 HSD17B2P37059 387 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 HNMTP50135 292 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ATXN3P54252 364 aaPredicted RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 AP1S2P56377 157 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 DNAJB13P59910 316 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 BNC1Q01954 994 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ASPHQ12797 758 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SP140Q13342 867 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 KIR2DS5Q14953 304 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 CLCA4Q14CN2 919 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TGFBIQ15582 683 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TECRLQ5HYJ1 363 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 HHATQ5VTY9 493 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SBSNQ6UWP8 590 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 UBE2R2Q712K3 238 aaPredicted RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 TAF8Q7Z7C8 310 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SLITRK4Q8IW52 837 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 OR5K2Q8NHB8 316 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 CCL4L1Q8NHW4 92 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 FAM76AQ8TAV0 307 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SKA2Q8WVK7 121 aaPredicted RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 SREK1Q8WXA9 508 aaKnown RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 DLG3Q92796 817 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 RAD51AP1Q96B01 352 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PTERQ96BW5 349 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PDXPQ96GD0 296 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SCYL1Q96KG9 808 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms