RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CD36P16671 472 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CEBPBP17676 345 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 C5AR1P21730 350 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RPL9P32969 192 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 FLT4P35916 1363 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MMP12P39900 470 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MLLT3P42568 568 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 PRCPP42785 496 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CRATP43155 626 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 GPR15P49685 360 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CDH13P55290 713 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ACTBP60709 375 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ACTG1P63261 375 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PLA2G7Q13093 441 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FCN2Q15485 313 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TAF13Q15543 124 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SV2CQ496J9 727 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IQCCQ4KMZ1 466 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SETMARQ53H47 684 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 LPCAT3Q6P1A2 487 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DHRS4L2Q6PKH6 230 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SPESP1Q6UW49 350 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 LMBR1LQ6UX01 489 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 USP54Q70EL1 1684 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TMUB2Q71RG4 321 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF572Q7Z3I7 529 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 EMSYQ7Z589 1322 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 AMIGO2Q86SJ2 522 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NLRP8Q86W28 1048 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OOSP2Q86WS3 158 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZFP82Q8N141 532 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SUMF1Q8NBK3 374 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CCDC54Q8NEL0 328 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR4C5Q8NGB2 326 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR51L1Q8NGJ5 315 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR2T11Q8NH01 316 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR8D1Q8WZ84 308 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RSC1A1Q92681 617 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KCNJ9Q92806 393 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RNF25Q96BH1 459 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF669Q96BR6 464 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM80Q96HE8 168 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 COQ10AQ96MF6 247 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CDK5RAP1Q96SZ6 601 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 SEPHS2Q99611 448 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TTYH2Q9BSA4 534 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM70Q9BUB7 260 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SLC19A3Q9BZV2 496 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 BTBD1Q9H0C5 482 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RPF2Q9H7B2 306 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 SRA1Q9HD15 236 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 MEPEQ9NQ76 525 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 KCNIP2Q9NS61 270 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ETNK2Q9NVF9 386 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 INTS7Q9NVH2 962 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM260Q9NX78 707 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 VSX1Q9NZR4 365 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 PDP1Q9P0J1 537 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM181Q9P2C4 612 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ASH2LQ9UBL3 628 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF69Q9UC07 566 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DKKL1Q9UK85 242 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KCNJ14Q9UNX9 436 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 POLHQ9Y253 713 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 EMILIN1Q9Y6C2 1016 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 LY75O60449 1722 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PRORSD1PA6NEY8 169 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF705EA8MWA4 302 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 CHURC1-FNTBB4DL54 471 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 F5H0A9 414 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 BOLA2-SMG1P6H3BVE0 249 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF208O43345 1280 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZBTB14O43829 449 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR1I1O60431 355 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PEX11AO75192 247 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 STK16O75716 305 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 UPK1BO75841 260 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CBX6O95503 412 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 LATS1O95835 1130 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 AGR2O95994 175 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MT-ND1P03886 318 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF286BP0CG31 522 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 UROSP10746 265 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PKMP14618 531 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 UCHL3P15374 230 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 EPB42P16452 691 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 LHCGRP22888 699 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CRHR1P34998 444 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 GPC1P35052 558 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DDOSTP39656 456 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 HLCSP50747 726 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 GPR143P51810 404 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF41P51814 821 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 GBX2P52951 348 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 RPP30P78346 268 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 CD83Q01151 205 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF33AQ06730 810 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CDH17Q12864 832 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NME3Q13232 169 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KCNJ8Q15842 424 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms