RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PHKG1Q16816 387 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 TEX35Q5T0J7 233 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 PRAMEF17Q5VTA0 474 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 KIAA1614Q5VZ46 1190 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 TMEM207Q6UWW9 146 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 C6orf15Q6UXA7 325 aaPredicted RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 MBOAT1Q6ZNC8 495 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 BPHLQ86WA6 291 aaPredicted RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 CEP97Q8IW35 865 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 IFT20Q8IY31 132 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 MCOLN3Q8TDD5 553 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 ZNF480Q8WV37 535 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 SMPDL3AQ92484 453 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 MCMBPQ9BTE3 642 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 SPRY4Q9C004 299 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 SYTL2Q9HCH5 934 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 GPAMQ9HCL2 828 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 INTS7Q9NVH2 962 aaKnown RBP14.21□□□□□ -0.13
USP4-212ENST00000486549 IRAK4Q9NWZ3 460 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 TAC3Q9UHF0 121 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 PDE10AQ9Y233 779 aa14.21□□□□□ -0.13
USP4-212ENST00000486549 NPEPPSL1A6NEC2 478 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 SLC16A5O15375 505 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 PHGDHO43175 533 aaKnown RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 HCRTR1O43613 425 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 PRICKLE3O43900 615 aaPredicted RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 IMPA1P29218 277 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 SPRP35270 261 aaPredicted RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 HSD17B2P37059 387 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 ITGA1P56199 1179 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 YBX1P67809 324 aaKnown RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 POU4F1Q01851 419 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 C19orf57Q0VDD7 668 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 NAB1Q13506 487 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 COL9A2Q14055 689 aaPredicted RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 UAP1Q16222 522 aaPredicted RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 GRTP1Q5TC63 336 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 THEMIS2Q5TEJ8 643 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 ARHGAP40Q5TG30 622 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 FCRL6Q6DN72 434 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 FIGLAQ6QHK4 219 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 NKAPQ8N5F7 415 aaKnown RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 ESX1Q8N693 406 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 ZSCAN1Q8NBB4 408 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 OR2L3Q8NG85 312 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 OR2A1Q8NGT9 310 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 OR8K5Q8NH50 307 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 SLC39A7Q92504 469 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 ALKBH8Q96BT7 664 aaKnown RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 TSPAN17Q96FV3 270 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 SLC12A9Q9BXP2 914 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 UNKQ9C0B0 810 aaKnown RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 TSPYL1Q9H0U9 437 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 L2HGDHQ9H9P8 463 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 PARVBQ9HBI1 364 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 STOX2Q9P2F5 926 aaPredicted RBP14.2□□□□□ -0.14
USP4-212ENST00000486549 IKZF3Q9UKT9 509 aa14.2□□□□□ -0.14
USP4-212ENST00000486549 LOC101059948A0A1B0GTJ6 334 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 E7ENX8 843 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 K7ENP7 123 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 CPNE3O75131 537 aaKnown RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 FKBP9O95302 570 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 GUCA1CO95843 209 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 HIST1H2AGP0C0S8 130 aaPredicted RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 LIFP15018 202 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 HIST1H2ADP20671 130 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 CMPK1P30085 196 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 GRIA3P42263 894 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 TAP2Q03519 686 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 ILF2Q12905 390 aaKnown RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 TAF1BQ53T94 588 aaPredicted RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 INO80CQ6PI98 192 aaPredicted RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 GPR135Q8IZ08 494 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 ANKRD49Q8WVL7 239 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 MED8Q96G25 268 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 HIST1H2AHQ96KK5 128 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 CCDC138Q96M89 665 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 FCRL4Q96PJ5 515 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 CYTH2Q99418 400 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 GPR22Q99680 433 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 HIST1H2AJQ99878 128 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 H2AFJQ9BTM1 129 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 SLC7A5P2Q9GIP4 190 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 ATG10Q9H0Y0 220 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 GPN2Q9H9Y4 310 aaPredicted RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 SLC6A20Q9NP91 592 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 MRPS30Q9NP92 439 aaKnown RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 ARL15Q9NXU5 204 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 UTP6Q9NYH9 597 aaKnown RBP14.19□□□□□ -0.14
USP4-212ENST00000486549 SERTAD3Q9UJW9 196 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 PLCL2Q9UPR0 1127 aa14.19□□□□□ -0.14
USP4-212ENST00000486549 E7EQ34 232 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 CDC7O00311 574 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 EFSO43281 561 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 NRP2O60462 931 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 OR2B3O76000 313 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 MT-ND3P03897 115 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 CTSBP07858 339 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 CCNYL3P0C7X3 344 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 MSL3P1P0C860 447 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms