RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 C1orf189Q5VU69 101 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PRMT9Q6P2P2 845 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 IGFL2Q6UWQ7 119 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PPP1R32Q7Z5V6 425 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 LMNTD1Q8N9Z9 388 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 TTC29Q8NA56 475 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PPP4R1Q8TF05 950 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 TCF12Q99081 682 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 P2RY12Q9H244 342 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 SEMA3GQ9NS98 782 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-211ENST00000597968 SLC2A6Q9UGQ3 507 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 CAPN6Q9Y6Q1 641 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 USP9XQ93008 2570 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-211ENST00000597968 SEC16AO15027 2179 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PIKFYVEQ9Y2I7 2098 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 NBPF19A0A087WUL8 3843 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 WIPF3A6NGB9 483 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 GOLGA6L6A8MZA4 724 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 CD3EAPO15446 510 aaKnown RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 HCRTR1O43613 425 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 PRICKLE3O43900 615 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 ALAS2P22557 587 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 PLEKHN1Q494U1 663 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 FAM69BQ5VUD6 431 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 IRAK1BP1Q5VVH5 260 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 PRAMEF13Q5VWM6 474 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 PTRHD1Q6GMV3 140 aaKnown RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 FIGLAQ6QHK4 219 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 TTLL10Q6ZVT0 673 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 OTOAQ7RTW8 1153 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 ATG4AQ8WYN0 398 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 SNRNP40Q96DI7 357 aaKnown RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 ZNF778Q96MU6 729 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 ILKAPQ9H0C8 392 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-211ENST00000597968 AGPAT4Q9NRZ5 378 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 HOMER3Q9NSC5 361 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 TREX1Q9NSU2 369 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 CUTCQ9NTM9 273 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 BFARQ9NZS9 450 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 SPATA7Q9P0W8 599 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 VPS9D1Q9Y2B5 631 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 FAM169AQ9Y6X4 670 aa13.06□□□□□ -0.32
TRIM28-211ENST00000597968 VSTM2BA6NLU5 285 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 CNOT3O75175 753 aaKnown RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 NDUFS3O75489 264 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 CBX6O95503 412 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 GRIA1P42261 906 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 CARSP49589 748 aaKnown RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 RELAQ04206 551 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 NKG7Q16617 165 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 CRB2Q5IJ48 1285 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 AGAP7PQ5VUJ5 663 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 B3GNTL1Q67FW5 361 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 MRNIPQ6NTE8 343 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 ZNF662Q6ZS27 426 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 SDCCAG8Q86SQ7 713 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 PRUNE1Q86TP1 453 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 VRK3Q8IV63 474 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 MVB12AQ96EY5 273 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 AGAP4Q96P64 663 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 SPSB2Q99619 263 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 WDR77Q9BQA1 342 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 SELENOSQ9BQE4 189 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 MFRPQ9BY79 579 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 CHRAC1Q9NRG0 131 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 SLC22A11Q9NSA0 550 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 PLAGL1Q9UM63 463 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 COPG1Q9Y678 874 aaKnown RBP13.05□□□□□ -0.32
TRIM28-211ENST00000597968 MED13Q9UHV7 2174 aa13.05□□□□□ -0.32
TRIM28-211ENST00000597968 PRRC2CQ9Y520 2896 aaKnown RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 TNRC6AQ8NDV7 1962 aaKnown RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 C1orf105O95561 183 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 ESR1P03372 595 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 FDXRP22570 491 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 HSD17B2P37059 387 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 GRIA3P42263 894 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 SARNPP82979 210 aaKnown RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 ELOAQ14241 798 aaKnown RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 SEMA3AQ14563 771 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 ARHGAP19Q14CB8 494 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 RPS6KA1Q15418 735 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 TUBB8Q3ZCM7 444 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 MEI1Q5TIA1 1274 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 FCRL6Q6DN72 434 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 NAPRTQ6XQN6 538 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 CFAP61Q8NHU2 1237 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 KIFC1Q9BW19 673 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 LHPPQ9H008 270 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 UTP6Q9NYH9 597 aaKnown RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 CDC23Q9UJX2 597 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 TTC7AQ9ULT0 858 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-211ENST00000597968 GUCA1BQ9UMX6 200 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 SLC5A6Q9Y289 635 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 PCDHGA10Q9Y5H3 936 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 SPTBP11277 2137 aa13.04□□□□□ -0.32
TRIM28-211ENST00000597968 A0A1W2PQ72 361 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ANKUB1A6NFN9 424 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ZNF839A8K0R7 811 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 IQCF5A8MTL0 148 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms