RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 BBS9Q3SYG4 887 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 HSP90AA5PQ58FG0 334 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 YOD1Q5VVQ6 348 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 RHBDD2Q6NTF9 364 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 GALNT7Q86SF2 657 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 AGGF1Q8N302 714 aaeCLIP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 DNAJC22Q8N4W6 341 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 LMNTD1Q8N9Z9 388 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 INPP5DQ92835 1189 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 ZUFSPQ96AP4 578 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 SLC25A18Q9H1K4 315 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 CHST8Q9H2A9 424 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM60AQ9NP50 221 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 IRAK4Q9NWZ3 460 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 FARSAQ9Y285 508 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 DHRS7Q9Y394 339 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 KLK4Q9Y5K2 254 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 HEMK1Q9Y5R4 338 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 CDC14CA4D256 554 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 MYO1CO00159 1063 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 PLA2G2AP14555 144 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 SKIV2L2P42285 1042 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 ARL4CP56559 192 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 ZIC1Q15915 447 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 CYP2A13Q16696 494 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 ACSBG2Q5FVE4 666 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 TCTE1Q5JU00 501 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 HIBCHQ6NVY1 386 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 CNTN4Q8IWV2 1026 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 SLC38A9Q8NBW4 561 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 C2CD4AQ8NCU7 369 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 OR9A1PQ8NGU1 263 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM136AQ96C01 138 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 RNF31Q96EP0 1072 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 CERS2Q96G23 380 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 IL17FQ96PD4 163 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 NDC1Q9BTX1 674 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 IARS2Q9NSE4 1012 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 TXLNGQ9NUQ3 528 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 UTP6Q9NYH9 597 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 EURLQ9NYK6 297 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 CORO1CQ9ULV4 474 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 SNX7Q9UNH6 387 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 MAN2B2Q9Y2E5 1009 aa17.07■□□□□ 0.32
SHKBP1-204ENST00000594862 SEC31AO94979 1220 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 CCNDBP1O95273 360 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ERGP11308 486 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 CMPK1P30085 196 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 RGS4P49798 205 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ARSFP54793 590 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ILF2Q12905 390 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 FRG1Q14331 258 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 NCF4Q15080 339 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 DEFB110Q30KQ9 67 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM199XQ6PEV8 388 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 TAX1BP1Q86VP1 789 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 C9orf43Q8TAL5 461 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 SMPDL3AQ92484 453 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 AARSD1Q9BTE6 412 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ENAMQ9NRM1 1142 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 TAS2R13Q9NYV9 303 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ANKMY1Q9P2S6 941 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ZC3H7BQ9UGR2 993 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 CIDEBQ9UHD4 219 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 TRMT6Q9UJA5 497 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 RUVBL2Q9Y230 463 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 KCNMB2Q9Y691 235 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 PIEZO2Q9H5I5 2752 aa17.06■□□□□ 0.32
SHKBP1-204ENST00000594862 ARHGEF33A8MVX0 844 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 EFCAB8A8MWE9 144 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 MKRN2OSH3BPM6 223 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 TTI1O43156 1089 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 ZBTB14O43829 449 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 PRICKLE3O43900 615 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 RFPL1O75677 317 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 PMS2P54278 862 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 MPP1Q00013 466 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 NFATC3Q12968 1075 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 GRM7Q14831 915 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 ZNF549Q6P9A3 640 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 FIGLAQ6QHK4 219 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM198BQ6UWH4 519 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 MAATS1Q7Z4T9 603 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 MCATQ8IVS2 390 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 APLFQ8IW19 511 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 ENDOVQ8N8Q3 282 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 OR2L3Q8NG85 312 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 CD200R1Q8TD46 325 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 COL26A1Q96A83 441 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 GPR21Q99679 349 aa17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 GPN3Q9UHW5 284 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM187AA6NFU0 413 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 H3BMH7 237 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 SRPX2O60687 465 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 HAUS5O94927 633 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ERVK-10P10266 1014 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 PIM1P11309 404 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 CASQ1P31415 396 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 RPA3P35244 121 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms