RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 UHMK1Q8TAS1 419 aaKnown RBP19.94■□□□□ 0.78
VPS53-210ENST00000571456 NCSTNQ92542 709 aa19.94■□□□□ 0.78
VPS53-210ENST00000571456 MRRFQ96E11 262 aaKnown RBP19.94■□□□□ 0.78
VPS53-210ENST00000571456 ROPN1BQ9BZX4 212 aaPredicted RBP19.94■□□□□ 0.78
VPS53-210ENST00000571456 TWSG1Q9GZX9 223 aa19.94■□□□□ 0.78
VPS53-210ENST00000571456 ROPN1Q9HAT0 212 aaPredicted RBP19.94■□□□□ 0.78
VPS53-210ENST00000571456 HRASLS2Q9NWW9 162 aa19.94■□□□□ 0.78
VPS53-210ENST00000571456 NFS1Q9Y697 457 aa19.94■□□□□ 0.78
VPS53-210ENST00000571456 COL27A1Q8IZC6 1860 aaPredicted RBP19.93■□□□□ 0.78
VPS53-210ENST00000571456 ARHGEF33A8MVX0 844 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 C2orf74A8MZ97 194 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 CDH16O75309 829 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 MPOP05164 745 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 ANKRD34CP0C6C1 535 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 COL6A2P12110 1019 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 PKLRP30613 574 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 INHBCP55103 352 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 ZFP36L1Q07352 338 aaKnown RBP19.93■□□□□ 0.78
VPS53-210ENST00000571456 KIR2DS3Q14952 304 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 ISXQ2M1V0 245 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 TIFABQ6ZNK6 161 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 CROCCP2Q86T23 111 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 LCA5Q86VQ0 697 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 SLITRK4Q8IW52 837 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 OR4E2Q8NGC2 313 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 OR2L8Q8NGY9 312 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 LIN37Q96GY3 246 aaPredicted RBP19.93■□□□□ 0.78
VPS53-210ENST00000571456 CCDC138Q96M89 665 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 RDH14Q9HBH5 336 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 NMRAL1Q9HBL8 299 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 SNX15Q9NRS6 342 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 OGFRQ9NZT2 677 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 ICKQ9UPZ9 632 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 ANKRD12Q6UB98 2062 aa19.93■□□□□ 0.78
VPS53-210ENST00000571456 PCM1Q15154 2024 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 PRAMEF33A0A0G2JMD5 474 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 HMX2A2RU54 273 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 CTIFO43310 598 aaKnown RBP19.92■□□□□ 0.78
VPS53-210ENST00000571456 DXOO77932 396 aaKnown RBP19.92■□□□□ 0.78
VPS53-210ENST00000571456 SLC35E2BP0CK96 405 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 THRAP10827 490 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 ERGP11308 486 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 MAGEA12P43365 314 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 ERVPABLB-1P60509 514 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 CDKL1Q00532 357 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 NFATC3Q12968 1075 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 GRB7Q14451 532 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 NAA25Q14CX7 972 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 FAM83EQ2M2I3 478 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 CDKL4Q5MAI5 379 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 KIAA1614Q5VZ46 1190 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 USP53Q70EK8 1073 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 PRSS42Q7Z5A4 293 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 KMT5CQ86Y97 462 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 ATL1Q8WXF7 558 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 RSC1A1Q92681 617 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 CAB39LQ9H9S4 337 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 CTNNAL1Q9UBT7 734 aa19.92■□□□□ 0.78
VPS53-210ENST00000571456 USP9YO00507 2555 aaPredicted RBP19.92■□□□□ 0.78
VPS53-210ENST00000571456 PIPSLA2A3N6 862 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 OR6C74A6NCV1 312 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 TLCD2A6NGC4 264 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 TERTO14746 1132 aaKnown RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 CAPN5O15484 640 aaPredicted RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 PHGDHO43175 533 aaKnown RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 CSO75390 466 aaKnown RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 ALDOAP04075 364 aaKnown RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 LTA4HP09960 611 aaKnown RBP19.91■□□□□ 0.78
VPS53-210ENST00000571456 CCDC166P0CW27 439 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 TYRP1P17643 537 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 CSF2RBP32927 897 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 BDKRB1P46663 353 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 GABREP78334 506 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 CYP2A13Q16696 494 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 NKAIN2Q5VXU1 208 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 KLC3Q6P597 504 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 CYB5D1Q6P9G0 228 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 TMEM207Q6UWW9 146 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 ACMSDQ8TDX5 336 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 NUDT22Q9BRQ3 303 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 MENTQ9BUN1 341 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 SEMA5BQ9P283 1151 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 POMT2Q9UKY4 750 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 SSUH2Q9Y2M2 353 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 CREBBPQ92793 2442 aa19.91■□□□□ 0.78
VPS53-210ENST00000571456 A0A096LPK6 155 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 TRIM49D1C9J1S8 452 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 MAP3K7O43318 606 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 C2P06681 752 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 CCND1P24385 295 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 GCAP28676 217 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 MLLT3P42568 568 aaPredicted RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 KPNA2P52292 529 aaKnown RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 IFFO1Q0D2I5 559 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 BMPR2Q13873 1038 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 ZNF460Q14592 562 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 TSNAXIP1Q2TAA8 658 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 ZNF574Q6ZN55 896 aaPredicted RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 CMC1Q7Z7K0 106 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms