RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TRIM54Q9BYV2 358 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 POPDC3Q9HBV1 291 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 SPHK1Q9NYA1 384 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 DMGDHQ9UI17 866 aaKnown RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 PSAT1Q9Y617 370 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 TMEM150CB9EJG8 249 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 GFYI3L273 518 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 CPNE3O75131 537 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 SCRG1O75711 98 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 KIAA0754O94854 1291 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 ENO2P09104 434 aaPredicted RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 PVRP15151 417 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 FOLR1P15328 257 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 SAT1P21673 171 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 CMPK1P30085 196 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 PEBP1P30086 187 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 RPA3P35244 121 aaPredicted RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 SPRP35270 261 aaPredicted RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 PNLIPRP1P54315 467 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 POU4F1Q01851 419 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 TSTA3Q13630 321 aaPredicted RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 GPR19Q15760 415 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 CYP2A13Q16696 494 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 KBTBD12Q3ZCT8 623 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 CCDC81Q6ZN84 652 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 TRIM73Q86UV7 250 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 RELL1Q8IUW5 271 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 SYTL1Q8IYJ3 562 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 NKAPQ8N5F7 415 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 PPM1NQ8N819 430 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 ZSCAN1Q8NBB4 408 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 EEF1AKMT1Q8WVE0 214 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 HNRNPLLQ8WVV9 542 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 ASB11Q8WXH4 323 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 SMPDL3AQ92484 453 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 ZNF501Q96CX3 271 aaPredicted RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 PPM1MQ96MI6 270 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 NRTNQ99748 197 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 OLFM1Q99784 485 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 SLC7A5P2Q9GIP4 190 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 TWSG1Q9GZX9 223 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 LRRC4CQ9HCJ2 640 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 UTP6Q9NYH9 597 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 PILRAQ9UKJ1 303 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 FAM208BQ5VWN6 2430 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 DSPP15924 2871 aaKnown RBP12.53□□□□□ -0.4
CLK3-224ENST00000568605 SEC16AO15027 2179 aa12.53□□□□□ -0.4
CLK3-224ENST00000568605 DLGAP3O95886 979 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 SLC16A8O95907 504 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 HBQ1P09105 142 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 CCNYL3P0C7X3 344 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 STMN1P16949 149 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 MAGP20916 626 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 ITPKBP27987 946 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 ITGA1P56199 1179 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 AP1S2P56377 157 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 GPX6P59796 221 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 ABHD18Q0P651 414 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 SLMAPQ14BN4 828 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 COL28A1Q2UY09 1125 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 CCSMST1Q4G0I0 132 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 GRTP1Q5TC63 336 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 THEMIS2Q5TEJ8 643 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 C6orf15Q6UXA7 325 aaPredicted RBP12.52□□□□□ -0.41
CLK3-224ENST00000568605 C2orf73Q8N5S3 287 aaPredicted RBP12.52□□□□□ -0.41
CLK3-224ENST00000568605 FLVCR1-AS1Q8TAF5 88 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 DENND1AQ8TEH3 1009 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 FBF1Q8TES7 1133 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 NKD1Q969G9 470 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 CCDC138Q96M89 665 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 CYTH2Q99418 400 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 GPR22Q99680 433 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 KLHL25Q9H0H3 589 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 PARVBQ9HBI1 364 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 GPAMQ9HCL2 828 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 CCDC177Q9NQR7 707 aaPredicted RBP12.52□□□□□ -0.41
CLK3-224ENST00000568605 SMYD2Q9NRG4 433 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 IRAK4Q9NWZ3 460 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 ANKMY1Q9P2S6 941 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 SERTAD3Q9UJW9 196 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 PCDHB3Q9Y5E6 796 aa12.52□□□□□ -0.41
CLK3-224ENST00000568605 KRT87PA6NCN2 255 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 E7EQ34 232 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CCND1P24385 295 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CXADRP78310 365 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 TIAL1Q01085 375 aaKnown RBP eCLIP12.51□□□□□ -0.412e-7■■■■■ 33.6
CLK3-224ENST00000568605 VAC14Q08AM6 782 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 USP10Q14694 798 aaKnown RBP12.51□□□□□ -0.41
CLK3-224ENST00000568605 TGIF1Q15583 401 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 ZC3H12BQ5HYM0 836 aaKnown RBP12.51□□□□□ -0.41
CLK3-224ENST00000568605 PWWP2BQ6NUJ5 590 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 C19orf48Q6RUI8 117 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CDHR3Q6ZTQ4 885 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 FRA10AC1Q70Z53 315 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 TAOK1Q7L7X3 1001 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 ADAMTSL2Q86TH1 951 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 LMNTD1Q8N9Z9 388 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 OR2L3Q8NG85 312 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 ATL1Q8WXF7 558 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 ANKRD7Q92527 254 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms