RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 PEX6Q13608 980 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 LYSMD4Q5XG99 296 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 RSRC2Q7L4I2 434 aaKnown RBP2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 TBC1D1Q86TI0 1168 aaPredicted RBP2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 KBTBD6Q86V97 674 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 TMEM173Q86WV6 379 aaPredicted RBP2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 CATSPERDQ86XM0 798 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 C17orf47Q8NEP4 570 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 GATAD1Q8WUU5 269 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 DHX58Q96C10 678 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 ARSGQ96EG1 525 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 MPP4Q96JB8 637 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 MIS12Q9H081 205 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 MYH16Q9H6N6 1097 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 PANK3Q9H999 370 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 GKN1Q9NS71 199 aa2.7□□□□□ -1.98
HMGB1P33-201ENST00000563485 A0A1W2PNU3 283 aaPredicted RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 A0A1W2PQ09 198 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 AGAP14A8MT82 685 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 EPHB6O15197 1021 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 ADAMDEC1O15204 470 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TSPAN1O60635 241 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TRUB2O95900 331 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 IGHEP01854 428 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 LIMK2P53671 638 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TMEM50BP56557 158 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 DDX10Q13206 875 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 MTF1Q14872 753 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 CA9Q16790 459 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 SYT14P1Q58G82 188 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 IGSF11Q5DX21 431 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 SLC25A30Q5SVS4 291 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 RNASEH2BQ5TBB1 312 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 LCN1P1Q5VSP4 162 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 KRT79Q5XKE5 535 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TMEM211Q6ICI0 200 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 KIF6Q6ZMV9 814 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TMPRSS11BQ86T26 416 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 NUP37Q8NFH4 326 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 C11orf45Q8TAV5 145 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 APOBEC4Q8WW27 367 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 SSMEM1Q8WWF3 244 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 FAM20AQ96MK3 541 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 KIFC3Q9BVG8 833 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 MAK16Q9BXY0 300 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 MMP27Q9H306 513 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 MED20Q9H944 212 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 MAN1B1Q9UKM7 699 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 RARRES3Q9UL19 164 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 ZNF215Q9UL58 517 aaPredicted RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 WBP11Q9Y2W2 641 aaKnown RBP2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 TRIM17Q9Y577 477 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 CSNK1G3Q9Y6M4 447 aa2.69□□□□□ -1.98
HMGB1P33-201ENST00000563485 A8MU10 97 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 SRRM5B3KS81 715 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 MEIS2O14770 477 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 TOMM70O94826 608 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 DNASE1P24855 282 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 NRIP1P48552 1158 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 MAT1AQ00266 395 aaKnown RBP2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 ZNF74Q16587 644 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 DUSP28Q4G0W2 176 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 SLC35D3Q5M8T2 416 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 PLEKHS1Q5SXH7 462 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 UGT3A1Q6NUS8 523 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 Q6ZR54 194 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 G2E3Q7L622 706 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 SZRD1Q7Z422 152 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 MAATS1Q7Z4T9 603 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 NUDT13Q86X67 352 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 SLC39A11Q8N1S5 342 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 POM121L12Q8N7R1 296 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 ATP8B4Q8TF62 1192 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 PTPMT1Q8WUK0 201 aaPredicted RBP2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 FAM120BQ96EK7 910 aaKnown RBP2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 AGAP4Q96P64 663 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 MS4A10Q96PG2 267 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 GAL3ST4Q96RP7 486 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 NKX3-1Q99801 234 aaPredicted RBP2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 OSGEPL1Q9H4B0 414 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 SYNCQ9H7C4 482 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 NDE1Q9NXR1 346 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 PSD3Q9NYI0 1048 aa2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 PTRH2Q9Y3E5 179 aaKnown RBP2.68□□□□□ -1.98
HMGB1P33-201ENST00000563485 IGLV3-10A0A075B6K4 115 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 LOC102723996A0A087X1L8 192 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 GPR75-ASB3A0A0A6YYF3 556 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 ASB14A6NK59 587 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 FPGTO14772 594 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 BCL2L11O43521 198 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 DOK2O60496 412 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 KRTAP1-4P0C5Y4 121 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 HAPLN1P10915 354 aaPredicted RBP2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 HLA-FP30511 346 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 GCH1P30793 250 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 CSTF2P33240 577 aaKnown RBP eCLIP2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 TSFMP43897 325 aaKnown RBP2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 CDH13P55290 713 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 XGP55808 180 aa2.67□□□□□ -1.98
HMGB1P33-201ENST00000563485 MC1RQ01726 317 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms