RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 GLB1LQ6UWU2 654 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ZDHHC21Q8IVQ6 265 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 FAM217AQ8IXS0 508 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 UBQLNLQ8IYU4 475 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 UBE2J2Q8N2K1 259 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TTC29Q8NA56 475 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 OR4F6Q8NGB9 312 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GPR150Q8NGU9 434 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 HCAR2Q8TDS4 363 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RNF170Q96K19 258 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CEP295NLQ96MC4 621 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CCDC115Q96NT0 180 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 YME1L1Q96TA2 773 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GDF15Q99988 308 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CHCHD6Q9BRQ6 235 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 UGT2B28Q9BY64 529 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GPR83Q9NYM4 423 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 EHD3Q9NZN3 535 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MOSPD1Q9UJG1 213 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NDRG4Q9ULP0 352 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RNF6Q9Y252 685 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GMPPBQ9Y5P6 360 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DNMT3AQ9Y6K1 912 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 C5orf42Q9H799 3197 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MYO9BQ13459 2157 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RALGAPA2Q2PPJ7 1873 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 A0A0B4J293 547 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 A0A1W2PQH9 124 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PDZK1P1A8MUH7 402 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 A8MX80 341 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 E5RI56 91 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ARNTLO00327 626 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ARHGAP33O14559 1287 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 IRAK2O43187 625 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 F2P00734 622 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PTHP01270 115 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 AZGP1P25311 298 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CA5AP35218 305 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GRK3P35626 688 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ACVRL1P37023 503 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SLC26A3P40879 764 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 STC1P52823 247 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RPP38P78345 283 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MRPS6P82932 125 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MAP2K5Q13163 448 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CDK10Q15131 360 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 BAK1Q16611 211 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MAPKAPK3Q16644 382 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PTPRNQ16849 979 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA1841Q6NSI8 718 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPR153Q6NV75 609 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZCCHC8Q6NZY4 707 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ABI3BPQ7Z7G0 1075 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SCD5Q86SK9 330 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPR149Q86SP6 731 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SVOPLQ8N434 492 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CDC26Q8NHZ8 85 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GIPC2Q8TF65 315 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 FBXO32Q969P5 355 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RNF31Q96EP0 1072 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZFYVE19Q96K21 471 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 OR2A14Q96R47 310 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SEMA3CQ99985 751 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 DPH2Q9BQC3 489 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TTPALQ9BTX7 342 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MMP27Q9H306 513 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PARVBQ9HBI1 364 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RANGRFQ9HD47 186 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 BPIFA1Q9NP55 256 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SERHLQ9NQF3 203 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 HEBP1Q9NRV9 189 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM39AQ9NV64 488 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PDP1Q9P0J1 537 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 AFF4Q9UHB7 1163 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF221Q9UK13 617 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CDH9Q9ULB4 789 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ABT1Q9ULW3 272 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PADI3Q9ULW8 664 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MAU2Q9Y6X3 613 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GBF1Q92538 1859 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LOC105371267A0A1B0GV96 52 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ISPDA4D126 451 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZW10O43264 779 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ICMTO60725 284 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SEC22BO75396 215 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 NDUFS3O75489 264 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GUCA1CO95843 209 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PTTG1O95997 202 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ITGB1P05556 798 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KRT8P05787 483 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 STSP08842 583 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ITGAMP11215 1152 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CBLP22681 906 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TACR1P25103 407 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MRPL19P49406 292 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TUFMP49411 452 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPR15P49685 360 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LIMK1P53667 647 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TBX4P57082 545 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MRPS15P82914 257 aaKnown RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms