RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TEX51A0A1B0GUA7 166 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 A0A1W2PR77 199 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PGRMC1O00264 195 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 FLRT2O43155 660 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SSX5O60225 188 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 MAN1A2O60476 641 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 POP7O75817 140 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 VIPP01282 170 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 IFI30P13284 250 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TCP1P17987 556 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 HSPA9P38646 679 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 BLKP51451 505 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 HK2P52789 917 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KPNB1Q14974 876 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ELOCQ15369 112 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KCNJ8Q15842 424 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LVRNQ6Q4G3 990 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 STRA8Q7Z7C7 330 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CLIP4Q8N3C7 705 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 MPP5Q8N3R9 675 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 C1orf216Q8TAB5 229 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 FNDC8Q8TC99 324 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SAP25Q8TEE9 199 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ART4Q93070 314 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TAMM41Q96BW9 452 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 QKIQ96PU8 341 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CGREF1Q99674 301 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 MRPL1Q9BYD6 325 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RAB17Q9H0T7 212 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SOHLH2Q9NX45 425 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM9Q9P0T7 183 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 STOX2Q9P2F5 926 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TBC1D29Q9UFV1 150 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SDK2Q58EX2 2172 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KALRNO60229 2985 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LOC105371267A0A1B0GV96 52 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ALOX15BO15296 676 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LIASO43766 372 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ACADSP16219 412 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CR2P20023 1033 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 FMO4P31512 558 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 COPS2P61201 443 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM115Q12893 351 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RIPK1Q13546 671 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PTK2BQ14289 1009 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RFTN1Q14699 578 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 NFATC4Q14934 902 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SYTL3Q4VX76 610 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 GPRC6AQ5T6X5 926 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC38Q5VT99 294 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM69BQ5VUD6 431 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TTC27Q6P3X3 843 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ADCK2Q7Z695 626 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ARL6IP6Q8N6S5 226 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TP53I13Q8NBR0 393 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ICA1LQ8NDH6 482 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 OR4E2Q8NGC2 313 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CASKIN2Q8WXE0 1202 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ST8SIA2Q92186 375 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 FAR2Q96K12 515 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LRGUKQ96M69 825 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CCDC138Q96M89 665 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 C12orf66Q96MD2 445 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KLHL4Q9C0H6 718 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KLHL14Q9P2G3 628 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RCOR3Q9P2K3 495 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 SNX6Q9UNH7 406 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CLCA2Q9UQC9 943 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ST14Q9Y5Y6 855 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 KMT2EQ8IZD2 1858 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CAPN8A6NHC0 703 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 DNALI1O14645 258 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PEX1O43933 1283 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PRAMEF10O60809 474 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TIPRLO75663 272 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LPOP22079 712 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CCR5P51681 352 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 CYP4F2P78329 520 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RPP30P78346 268 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 POU6F2P78424 691 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TRADDQ15628 312 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PRAMEF17Q5VTA0 474 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PTRHD1Q6GMV3 140 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 IZUMO2Q6UXV1 221 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC34Q8IZ02 419 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 PPM1NQ8N819 430 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 ELMO1Q92556 727 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 HES6Q96HZ4 224 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 RTKNQ9BST9 563 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 GIN1Q9NXP7 522 aa7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 DIDO1Q9BTC0 2240 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-219ENST00000514096 TRAV20A0A0B4J274 112 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 A0A1W2PQ72 361 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PDE2AO00408 941 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SH3BGRLO75368 114 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PRKAR1AP10644 381 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KELP23276 732 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 RPL35P42766 123 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PCP4P48539 62 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ENTPD1P49961 510 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms