RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MAGEB10Q96LZ2 347 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 C7orf26Q96N11 449 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 MIPEPQ99797 713 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 DUSP23Q9BVJ7 150 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 C1QTNF3Q9BXJ4 246 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 PCBD2Q9H0N5 130 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 EPN3Q9H201 632 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 ARRDC1-AS1Q9H2J1 176 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 GAREM1Q9H706 876 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 KIR3DX1Q9H7L2 352 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SEMA4BQ9NPR2 832 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 DLL3Q9NYJ7 618 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CIDEBQ9UHD4 219 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 KCNE2Q9Y6J6 123 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SPAG17Q6Q759 2223 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CACNA1AO00555 2505 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 YY2O15391 372 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 ZW10O43264 779 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 CHEK2O96017 543 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 OTCP00480 354 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 CELA2BP08218 269 aaPredicted RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 RPS17P08708 135 aaKnown RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 IMPA1P29218 277 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 GGT5P36269 586 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 AGTR2P50052 363 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 CDH13P55290 713 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 HHEXQ03014 270 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 GALNT1Q10472 559 aaPredicted RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 LCP2Q13094 533 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 ZNF423Q2M1K9 1284 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 DEFB133Q30KQ1 61 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 HLA-BQ31612 363 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 PTCHD3Q3KNS1 767 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 CCSMST1Q4G0I0 132 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 XKR5Q6UX68 686 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 FRMD7Q6ZUT3 714 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 RASGRP3Q8IV61 690 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 LRRC34Q8IZ02 419 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 OR52E1Q8NGJ3 308 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 CCT6BQ92526 530 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 ESAMQ96AP7 390 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 HAUS8Q9BT25 410 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 GTPBP2Q9BX10 602 aaKnown RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 SRMSQ9H3Y6 488 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 PFDN4Q9NQP4 134 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 SEMA4GQ9NTN9 838 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 EVA1BQ9NVM1 165 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 SCHIP1Q9P0W5 487 aaPredicted RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 CPNE7Q9UBL6 633 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 PCTPQ9UKL6 214 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 PLAGL1Q9UM63 463 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.78□□□□□ -0.2
SKA1-202ENST00000398452 RAP2CQ9Y3L5 183 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 ST14Q9Y5Y6 855 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 GON4LQ3T8J9 2241 aa13.78□□□□□ -0.2
SKA1-202ENST00000398452 A0A1B0GTQ1 180 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 A6NCN8 305 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLCO1B7G3V0H7 640 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 HGSO14964 777 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 TAPBPO15533 448 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SHOX2O60902 331 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 SNNO75324 88 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 CCNDBP1O95273 360 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 EPHA8P29322 1005 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLC19A1P41440 591 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 HK2P52789 917 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 PKNOX1P55347 436 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 TBPL1P62380 186 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 CDC16Q13042 620 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SUZ12Q15022 739 aaKnown RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 INAVAQ3KP66 663 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 ARL13AQ5H913 290 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 ARMC6Q6NXE6 501 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 KLHL35Q6PF15 583 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 EFL1Q7Z2Z2 1120 aaKnown RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 GOLGA7Q7Z5G4 137 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 CUZD1Q86UP6 607 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 THOC6Q86W42 341 aaKnown RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 MYLK4Q86YV6 388 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 SFRP1Q8N474 314 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLC37A2Q8TED4 501 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 ZNF483Q8TF39 744 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 SETD7Q8WTS6 366 aaKnown RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 ZNF480Q8WV37 535 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLC22A18Q96BI1 424 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 FAR2Q96K12 515 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLC38A3Q99624 504 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 TMEM79Q9BSE2 394 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 TRIM55Q9BYV6 548 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 GSTO2Q9H4Y5 243 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 NOL11Q9H8H0 719 aaKnown RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 IPPKQ9H8X2 491 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 ACTR8Q9H981 624 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 CAPN10Q9HC96 672 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 MID1IP1Q9NPA3 183 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 FGFR1OP2Q9NVK5 253 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 ZNF624Q9P2J8 865 aaPredicted RBP13.77□□□□□ -0.21
SKA1-202ENST00000398452 SLC22A14Q9Y267 594 aa13.77□□□□□ -0.21
SKA1-202ENST00000398452 TPRP12270 2363 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms