RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PCBP2Q15366 365 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MLF2Q15773 248 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 TMEM52BQ4KMG9 183 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 REP15Q6BDI9 236 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PHTF2Q8N3S3 785 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 AADATQ8N5Z0 425 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 FAM13CQ8NE31 585 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 BHLHE22Q8NFJ8 381 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 APOOQ9BUR5 198 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 RNPEPL1Q9HAU8 725 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 FAM234BA2RU67 622 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 B4DGG1 531 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GPR89AB7ZAQ6 455 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ENTPD5O75356 428 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GPR89BP0CG08 455 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 CDH2P19022 906 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PRLHRP49683 370 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 NEK2P51955 445 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 FCHO2Q0JRZ9 810 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 NEK5Q6P3R8 708 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 TMIGD1Q6UXZ0 262 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ARMCX6Q7L4S7 300 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 RASGEF1AQ8N9B8 481 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 TMEM145Q8NBT3 493 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 SEPHS2Q99611 448 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 C19orf43Q9BQ61 176 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 EBPLQ9BY08 206 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GSTO2Q9H4Y5 243 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MVB12BQ9H7P6 319 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ZIM2Q9NZV7 527 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PLAGL1Q9UM63 463 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PSMG1O95456 288 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 MYCLP1P12525 358 aaPredicted RBP11.27□□□□□ -0.6
VPS4A-201ENST00000254950 FASP25445 335 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 SLC34A1Q06495 639 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 DPY19L1Q2PZI1 675 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 ATAD3BQ5T9A4 648 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 COL13A1Q5TAT6 717 aaPredicted RBP11.27□□□□□ -0.6
VPS4A-201ENST00000254950 LIPJQ5W064 366 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 FBXW8Q8N3Y1 598 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 OR52B6Q8NGF0 335 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 ROPN1LQ96C74 230 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 ECHDC3Q96DC8 303 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 VPS50Q96JG6 964 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 RDH14Q9HBH5 336 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 ADGRE2Q9UHX3 823 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 VPS4AQ9UN37 437 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 FAF1Q9UNN5 650 aaPredicted RBP11.27□□□□□ -0.6
VPS4A-201ENST00000254950 PCDHB11Q9Y5F2 797 aa11.27□□□□□ -0.6
VPS4A-201ENST00000254950 DNMT3AQ9Y6K1 912 aaPredicted RBP11.27□□□□□ -0.6
VPS4A-201ENST00000254950 SCN5AQ14524 2016 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF8P17098 575 aaPredicted RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 STXBP1P61764 594 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 SH3BP2P78314 561 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CAMK1Q14012 370 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 IRF4Q15306 451 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 FAM174BQ3ZCQ3 159 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 C10orf62Q5T681 223 aaPredicted RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 OR6Y1Q8NGX8 325 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 RHBDF1Q96CC6 855 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 FBXL8Q96CD0 374 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 PTCD3Q96EY7 689 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 OTUB1Q96FW1 271 aaPredicted RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 LMLNQ96KR4 655 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 BIRC8Q96P09 236 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CAPN10Q9HC96 672 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 FBRSL1Q9HCM7 1045 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 SNX7Q9UNH6 387 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CORO2BQ9UQ03 480 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 KRT75O95678 551 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 TGFB1P01137 390 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 IL6P05231 212 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 RPS17P08708 135 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CISD3P0C7P0 127 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 SHMT2P34897 504 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 EMX2Q04743 252 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 SRSF11Q05519 484 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CSTF3Q12996 717 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 METTL2BQ6P1Q9 378 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 OR4E2Q8NGC2 313 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 AGAP11Q8TF27 550 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 UGT2B28Q9BY64 529 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CADM1Q9BY67 442 aaKnown RBP11.27□□□□□ -0.61
VPS4A-201ENST00000254950 CAAP1Q9H8G2 361 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 TRPV4Q9HBA0 871 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 SARDHQ9UL12 918 aa11.27□□□□□ -0.61
VPS4A-201ENST00000254950 EPORP19235 508 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 CD9P21926 228 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 EEF1B2P24534 225 aaKnown RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 RABIFP47224 123 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 ARRB1P49407 418 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 CLCN7P51798 805 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 VAC14Q08AM6 782 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 MED21Q13503 144 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 INTS11Q5TA45 600 aaKnown RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 SLC13A3Q8WWT9 602 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PYDC1Q8WXC3 89 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF419Q96HQ0 510 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 HHIPQ96QV1 700 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 C1QTNF1Q9BXJ1 281 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms