RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 ZNF140P52738 457 aaPredicted RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 IL2P60568 153 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 RACK1P63244 317 aaKnown RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 E2F2Q14209 437 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 TWF2Q6IBS0 349 aaKnown RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 TTC23LQ6PF05 361 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 SCD5Q86SK9 330 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 LIX1Q8N485 282 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 OR52E6Q96RD3 313 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 CPPED1Q9BRF8 314 aaPredicted RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 ZYG11BQ9C0D3 744 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 RNF167Q9H6Y7 350 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 PRDM5Q9NQX1 630 aaPredicted RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 TRMT13Q9NUP7 481 aaKnown RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 NLE1Q9NVX2 485 aaPredicted RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 PDP1Q9P0J1 537 aaPredicted RBP13.79□□□□□ -0.2
LDB3-209ENST00000623056 ZMYM5Q9UJ78 669 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 RIMKLBQ9ULI2 386 aa13.79□□□□□ -0.2
LDB3-209ENST00000623056 A0A096LPI6 279 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 LOC100506127A0A0U1RQW1 187 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 TBKBP1A7MCY6 615 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 PER2O15055 1255 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 OR1I1O60431 355 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SMIM10L2AP0DMW4 78 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SMIM10L2BP0DMW5 78 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 C21orf33P30042 268 aaPredicted RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 GTF2H2Q13888 395 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SMUG1Q53HV7 270 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SOWAHCQ53LP3 525 aaPredicted RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 GTF2H2CQ6P1K8 395 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 FAM171BQ6P995 826 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 AFTPHQ6ULP2 937 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 GATAD2AQ86YP4 633 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 UBQLNLQ8IYU4 475 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 ZNF683Q8IZ20 524 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 GLB1L3Q8NCI6 653 aaPredicted RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 CD200R1Q8TD46 325 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 ELMO1Q92556 727 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 C1orf74Q96LT6 269 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 COPS4Q9BT78 406 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 POLR1EQ9GZS1 481 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 NUAK2Q9H093 628 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 CLMPQ9H6B4 373 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 ZFP14Q9HCL3 533 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 KRT84Q9NSB2 600 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 TMEM248Q9NWD8 314 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SNX6Q9UNH7 406 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 WBP11Q9Y2W2 641 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 SPO11Q9Y5K1 396 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 PEX16Q9Y5Y5 336 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SNX4O95219 450 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 DNTTP04053 509 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 PKMP14618 531 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 PRKCAP17252 672 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SMPD1P17405 629 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 DNAJA1P31689 397 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 RPP38P78345 283 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 MRPS15P82914 257 aaKnown RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 CDK10Q15131 360 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 ZFP69Q49AA0 526 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 TIGD5Q53EQ6 642 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 CTSL3PQ5NE16 218 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 NXNL2Q5VZ03 156 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 SLC46A3Q7Z3Q1 461 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 ENTHD1Q8IYW4 607 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 KBTBD8Q8NFY9 601 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 KATNBL1Q9H079 304 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 NMUR1Q9HB89 426 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.78□□□□□ -0.2
LDB3-209ENST00000623056 NUDT4Q9NZJ9 180 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 KIF17Q9P2E2 1029 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 RAPGEFL1Q9UHV5 662 aa13.78□□□□□ -0.2
LDB3-209ENST00000623056 hCG_2039718K7EN88 272 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 RPLP0P05388 317 aaKnown RBP13.77□□□□□ -0.21
LDB3-209ENST00000623056 FPR1P21462 350 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 PBX3P40426 434 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 PIK3CGP48736 1102 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 PCBP2Q15366 365 aaKnown RBP eCLIP13.77□□□□□ -0.21
LDB3-209ENST00000623056 ZNF792Q3KQV3 632 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 ATG16L2Q8NAA4 619 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 OR6J1Q8NGC5 347 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 OR4K2Q8NGD2 314 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 POP5Q969H6 163 aaKnown RBP13.77□□□□□ -0.21
LDB3-209ENST00000623056 SDHCQ99643 169 aaPredicted RBP13.77□□□□□ -0.21
LDB3-209ENST00000623056 PITX2Q99697 317 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 PAAF1Q9BRP4 392 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 IL1RAPQ9NPH3 570 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 ADPRHL2Q9NX46 363 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 CPA4Q9UI42 421 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 TSR3Q9UJK0 312 aaKnown RBP13.77□□□□□ -0.21
LDB3-209ENST00000623056 MKLN1Q9UL63 735 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 SAMD4AQ9UPU9 718 aaKnown RBP13.77□□□□□ -0.21
LDB3-209ENST00000623056 DOCK4Q8N1I0 1966 aa13.77□□□□□ -0.21
LDB3-209ENST00000623056 A0A0U1RQS6 177 aa13.76□□□□□ -0.21
LDB3-209ENST00000623056 CASTOR2A6NHX0 329 aa13.76□□□□□ -0.21
LDB3-209ENST00000623056 EVPLLA8MZ36 301 aa13.76□□□□□ -0.21
LDB3-209ENST00000623056 AP3D1O14617 1153 aa13.76□□□□□ -0.21
LDB3-209ENST00000623056 RGS14O43566 566 aa13.76□□□□□ -0.21
LDB3-209ENST00000623056 OTCP00480 354 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms