RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 ZNF480Q8WV37 535 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 PPM1EQ8WY54 764 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 FAM161BQ96MY7 647 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 FOPNLQ96NB1 174 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 RAB3IPQ96QF0 476 aaPredicted RBP6.6□□□□□ -1.35
MSH5-217ENST00000494458 EGFL8Q99944 293 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 PCED1AQ9H1Q7 454 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 EBF2Q9HAK2 575 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 AIG1Q9NVV5 245 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 WWOXQ9NZC7 414 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 ZIM2Q9NZV7 527 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 DMTF1Q9Y222 760 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 SLC22A14Q9Y267 594 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 RNF11Q9Y3C5 154 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 PTGDR2Q9Y5Y4 395 aa6.6□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3DA0A087WVF3 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3IA0A087WXS9 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3EA0A087X179 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3KA0A087X1G2 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 KANSL1LA0AUZ9 987 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 DYTNA2CJ06 578 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 A6NCN8 305 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3FA6NER0 549 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 POM121BA6NF01 834 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LRRC72A6NJI9 287 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3LB9A6J9 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 PSMD12O00232 456 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 SLC28A1O00337 649 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 FBP2O00757 339 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 HGSO14964 777 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 GYG2O15488 501 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 PRICKLE3O43900 615 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 GFRA3O60609 400 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 ULK1O75385 1050 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 SKAP2O75563 359 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 RSL1D1O76021 490 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 CHEK2O96017 543 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 PCCBP05166 539 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3HP0C7X1 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LINC00032P0C843 101 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 HSD3B1P14060 373 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 IL9P15248 144 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 FOSL2P15408 326 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CD22P20273 847 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 ITGAXP20702 1163 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CD72P21854 359 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 HNRNPA2B1P22626 353 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 KELP23276 732 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 HSD3B2P26439 372 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 OXTRP30559 389 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 HNF4AP41235 474 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 RPS9P46781 194 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 HTR6P50406 440 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 C21orf58P58505 322 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CYLC2Q14093 348 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 LRRC32Q14392 662 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 NFATC4Q14934 902 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CCDC85BQ15834 202 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 DNAL1Q4LDG9 190 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 SYTL3Q4VX76 610 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 WASHC2DQ5SRD0 308 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 FAM219BQ5XKK7 198 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3GQ6DHY5 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3CQ6IPX1 549 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 GRHL2Q6ISB3 625 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 BLOC1S3Q6QNY0 202 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LCTLQ6UWM7 567 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 GCNT7Q6ZNI0 430 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 Q6ZS52 159 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 THOC6Q86W42 341 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 LONP2Q86WA8 852 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LAS2Q8IYD9 372 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D21Q8IYX1 336 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TBC1D3Q8IZP1 549 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 KIF2BQ8N4N8 673 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 PHC3Q8NDX5 983 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 FAM13CQ8NE31 585 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 OR4K1Q8NGD4 311 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 PROKR1Q8TCW9 393 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TFGQ92734 400 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 RAD51AP1Q96B01 352 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 SHDQ96IW2 340 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CATSPER2Q96P56 530 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CDK15Q96Q40 435 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 GPATCH1Q9BRR8 931 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 ACTL8Q9H568 366 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 EFCAB1Q9HAE3 211 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LMAN1LQ9HAT1 526 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 POLMQ9NP87 494 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 LTB4R2Q9NPC1 389 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 CD93Q9NPY3 652 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 TM7SF3Q9NS93 570 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 RIC8BQ9NVN3 520 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 SPATA6Q9NWH7 488 aaPredicted RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 C2orf42Q9NWW7 574 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 MRPS17Q9Y2R5 130 aaKnown RBP6.59□□□□□ -1.35
MSH5-217ENST00000494458 OR1A2Q9Y585 309 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 DGKBQ9Y6T7 804 aa6.59□□□□□ -1.35
MSH5-217ENST00000494458 LOC100653049A0A140TA62 436 aa6.58□□□□□ -1.36
MSH5-217ENST00000494458 ATP6AP2A0A1C7CYW4 349 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms