RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CD209Q9NNX6 404 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CENPMQ9NSP4 180 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PANK4Q9NVE7 773 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 EXD2Q9NVH0 621 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FBXO34Q9NWN3 711 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC24A2Q9UI40 661 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NCKAP1Q9Y2A7 1128 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 DHRS7Q9Y394 339 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 RIPK3Q9Y572 518 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ASTN2O75129 1339 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CEP290O15078 2479 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ALPK3Q96L96 1907 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 HMX2A2RU54 273 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MARCH11A6NNE9 402 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ISM1B1AKI9 464 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CALUO43852 315 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 GMDSO60547 372 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PEX10O60683 326 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 LPXNO60711 386 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF202O95125 648 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZFPL1O95159 310 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MX1P20591 662 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PTPN6P29350 595 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ICAM3P32942 547 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ATP5C1P36542 298 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ARL1P40616 181 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 WASP42768 502 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PAFAH1B1P43034 410 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 OAZ1P54368 228 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 RAD23BP54727 409 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CLDN8P56748 225 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ERVFC1P60507 584 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FKBP1AP62942 108 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FKBP1BP68106 108 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ROM1Q03395 351 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 STX3Q13277 289 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PNLIPRP3Q17RR3 467 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NKAIN1Q4KMZ8 207 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZRANB3Q5FWF4 1079 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 GLRA4Q5JXX5 417 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FAXCQ5TGI0 409 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 GARNL3Q5VVW2 1013 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC9A4Q6AI14 798 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 HMBOX1Q6NT76 420 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ARMCX5Q6P1M9 558 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ARSKQ6UWY0 536 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 LINC00114Q6XXX2 140 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 Q6ZS46 218 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 Q6ZVL8 140 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TRMT11Q7Z4G4 463 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ADGRA1Q86SQ6 560 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 DDIASQ8IXT1 998 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 BHLHE23Q8NDY6 225 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NANPQ8TBE9 248 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ST8SIA4Q92187 359 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CD101Q93033 1021 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF479Q96JC4 524 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MEGF10Q96KG7 1140 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 LURAP1Q96LR2 239 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CYP2S1Q96SQ9 504 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SMOQ99835 787 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PELOQ9BRX2 385 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM79Q9BSE2 394 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 C1orf43Q9BWL3 253 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 COLEC11Q9BWP8 271 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZYG11BQ9C0D3 744 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 DDX47Q9H0S4 455 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ALX4Q9H161 411 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MTIF3Q9H2K0 278 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 LDAHQ9H6V9 325 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 C10orf88Q9H8K7 445 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 COG4Q9H9E3 785 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 KCNMB3Q9NPA1 279 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SETD4Q9NVD3 440 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CLEC5AQ9NY25 188 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 UVRAGQ9P2Y5 699 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NOCTQ9UK39 431 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 RAB21Q9UL25 225 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PALD1Q9ULE6 856 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CA14Q9ULX7 337 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 STAP1Q9ULZ2 295 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PLAGL2Q9UPG8 496 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ASB1Q9Y576 335 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM205AQ6ZU69 1335 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SMIM31A0A1B0GVY4 71 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A6NL46 340 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 UBE2Q2LH0YL09 131 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SYT5O00445 386 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TNPO2O14787 897 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 KCNAB3O43448 404 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ASNA1O43681 348 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CCDC22O60826 627 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF821O75541 412 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 WFS1O76024 890 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR7A10O76100 309 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 C22orf31O95567 290 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 KRT8P05787 483 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 FCER2P06734 321 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms