RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 GALNT13Q8IUC8 556 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 SMYD1Q8NB12 490 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 OR52E4Q8NGH9 312 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 BORCS5Q969J3 196 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 IGSF21Q96ID5 467 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 ITCHQ96J02 903 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 CCDC138Q96M89 665 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 CPPED1Q9BRF8 314 aaPredicted RBP11.52□□□□□ -0.57
CD44-209ENST00000433892 SLC32A1Q9H598 525 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 WARS2Q9UGM6 360 aaKnown RBP11.52□□□□□ -0.57
CD44-209ENST00000433892 SRRDQ9UH36 339 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 ANAPC1Q9H1A4 1944 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 FAM220BPB1ANY3 271 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 GFRA2O00451 464 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 BCL10O95999 233 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 C1QCP02747 245 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 HNRNPCP07910 306 aaKnown RBP eCLIP11.51□□□□□ -0.57
CD44-209ENST00000433892 NSG1P42857 185 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 GZMMP51124 257 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 BMXP51813 675 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 CLDN8P56748 225 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 B4GALNT1Q00973 533 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 HSPA14Q0VDF9 509 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 EPS8Q12929 822 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 TUBA3CQ13748 450 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 LAPTM4AQ15012 233 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 DPY19L1Q2PZI1 675 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ATP13A5Q4VNC0 1218 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 CES5AQ6NT32 575 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 CRTC1Q6UUV9 634 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PLPP6Q8IY26 295 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ZCCHC7Q8N3Z6 543 aaKnown RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 OR5K1Q8NHB7 308 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 RAET1EQ8TD07 263 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 RAB2BQ8WUD1 216 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ASIC4Q96FT7 647 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PYURFQ96I23 114 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PLEKHA8Q96JA3 519 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 EGLN2Q96KS0 407 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 BEGAINQ9BUH8 593 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 SLC29A3Q9BZD2 475 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 KCNH6Q9H252 994 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ELOVL6Q9H5J4 265 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ZNF334Q9HCZ1 680 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 KCTD5Q9NXV2 234 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 TMEFF2Q9UIK5 374 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 MBD1Q9UIS9 605 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 C3orf18Q9UK00 162 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PSME2Q9UL46 239 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PPT2Q9UMR5 302 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 A0A096LPI6 279 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 J3QRK9 145 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PER2O15055 1255 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 SOCS5O75159 536 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ZBTB11O95625 1053 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 PTPN6P29350 595 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 CCL23P55773 120 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ISL1P61371 349 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 SLC14A1Q13336 389 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 MOGQ16653 247 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 LRIF1Q5T3J3 769 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 LRRC66Q68CR7 880 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 METTL2BQ6P1Q9 378 aaKnown RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 C16orf87Q6PH81 154 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 Q6ZNB5 142 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 UBE2R2Q712K3 238 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 ZNF551Q7Z340 670 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 GALNT5Q7Z7M9 940 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 DCP2Q8IU60 420 aaKnown RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 TMEM132CQ8N3T6 1108 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 ARL10Q8N8L6 244 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 FBXL8Q96CD0 374 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 COPS8Q99627 209 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 CCDC90BQ9GZT6 254 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 FAIMQ9NVQ4 179 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 PAK1IP1Q9NWT1 392 aaPredicted RBP11.51□□□□□ -0.57
CD44-209ENST00000433892 VNN3Q9NY84 501 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 GPRC5BQ9NZH0 403 aa11.51□□□□□ -0.57
CD44-209ENST00000433892 NUP214P35658 2090 aaPredicted RBP11.5□□□□□ -0.57
CD44-209ENST00000433892 MITFO75030 526 aaPredicted RBP11.5□□□□□ -0.57
CD44-209ENST00000433892 XYLBO75191 536 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 LATS1O95835 1130 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 IGSF6O95976 241 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 SDC1P18827 310 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 SERPINA4P29622 427 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 CD70P32970 193 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 STK19P49842 368 aaPredicted RBP11.5□□□□□ -0.57
CD44-209ENST00000433892 MLLT10P55197 1068 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 LMAN2Q12907 356 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 LRRC73Q5JTD7 316 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 ZNF691Q5VV52 312 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 TPGS2Q68CL5 300 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 DOK6Q6PKX4 331 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.5□□□□□ -0.57
CD44-209ENST00000433892 RNF168Q8IYW5 571 aaPredicted RBP11.5□□□□□ -0.57
CD44-209ENST00000433892 RNF175Q8N4F7 328 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 AUTS2Q8WXX7 1259 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 APIPQ96GX9 242 aa11.5□□□□□ -0.57
CD44-209ENST00000433892 BARD1Q99728 777 aaKnown RBP11.5□□□□□ -0.57
CD44-209ENST00000433892 FUNDC2Q9BWH2 189 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms