RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 GTF2H2CQ6P1K8 395 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TTC23LQ6PF05 361 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM207Q6UWW9 146 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 Q6ZNX1 250 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 SPATA19Q7Z5L4 167 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PIK3C3Q8NEB9 887 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 VPS37AQ8NEZ2 397 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 C8orf48Q96LL4 319 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 SLC30A3Q99726 388 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 AARSD1Q9BTE6 412 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 C2orf49Q9BVC5 232 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CDADC1Q9BWV3 514 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 LHPPQ9H008 270 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 RMND5AQ9H871 391 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 EDARQ9UNE0 448 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PRMT5O14744 637 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 MTX2O75431 263 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 OTCP00480 354 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 COX7A2P14406 83 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ATP5C1P36542 298 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TXNL4AP83876 142 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 E2F2Q14209 437 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CYP27C1Q4G0S4 372 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 NHSL2Q5HYW2 709 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PSAPL1Q6NUJ1 521 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PLET1Q6UQ28 207 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PROSER1Q86XN7 944 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM132CQ8N3T6 1108 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 IL12RB2Q99665 862 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 NPLQ9BXD5 320 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 LRTM1Q9HBL6 345 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ABCB9Q9NP78 766 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 KRT84Q9NSB2 600 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 UGT2A1Q9Y4X1 527 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TTC34A8MYJ7 566 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ZW10O43264 779 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 KDM4BO94953 1096 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 RAP2AP10114 183 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TACR2P21452 398 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 MATN1P21941 496 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 GTF2E2P29084 291 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CRATP43155 626 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 GNPDA1P46926 289 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CD300CQ08708 224 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CRHR2Q13324 411 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 SUZ12Q15022 739 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 DGKKQ5KSL6 1271 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 UBXN11Q5T124 520 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 MSANTD2Q6P1R3 559 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 DOK6Q6PKX4 331 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 BLOC1S3Q6QNY0 202 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF467Q7Z7K2 595 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CARM1Q86X55 608 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF280BQ86YH2 543 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 OR13J1Q8NGT2 312 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 CHCHD6Q9BRQ6 235 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 TNKS2Q9H2K2 1166 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 HSFX1Q9UBD0 423 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PLCL2Q9UPR0 1127 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 ARID1BQ8NFD5 2236 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PRR23AA6NEV1 266 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MGAT4DA6NG13 374 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ATP6V1G2-DDX39BF2Z307 99 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PLATP00750 562 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 NPPAP01160 153 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 OPN1SWP03999 348 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RPL9P32969 192 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PURAQ00577 322 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 BHLHB9Q6PI77 547 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TBPL2Q6SJ96 375 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RNF180Q86T96 592 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ZDHHC21Q8IVQ6 265 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 DTWD1Q8N5C7 304 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 SOCS4Q8WXH5 440 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 GPR78Q96P69 363 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ARHGAP39Q9C0H5 1083 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ING3Q9NXR8 418 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TCRBV3S1A0A5B6 114 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TRIM64A6NGJ6 449 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TRIM64BA6NI03 449 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PLD2O14939 933 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ALDH2P05091 517 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 C8BP07358 591 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 BMP2P12643 396 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RPL26P61254 145 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ILF2Q12905 390 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 SELPLGQ14242 412 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MED22Q15528 200 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 NPTX1Q15818 432 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TTLL9Q3SXZ7 439 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ANKFN1Q8N957 763 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 OR5H6Q8NGV6 325 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RAB2BQ8WUD1 216 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PPP3R2Q96LZ3 170 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MTERF1Q99551 399 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 SGIP1Q9BQI5 828 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 INTS10Q9NVR2 710 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RDH8Q9NYR8 311 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 CD84Q9UIB8 345 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 DUSP12Q9UNI6 340 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms