RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SPINK5Q9NQ38 1064 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-217ENST00000637988 PLS1Q14651 629 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC39Q9UFE4 941 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 AQRO60306 1485 aaKnown RBP eCLIP7.16□□□□□ -1.26
SCN1A-217ENST00000637988 UQCRHLA0A096LP55 91 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 SULT6B1Q6IMI4 303 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 HOOK3Q86VS8 718 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 PSMD1Q99460 953 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 TSNARE1Q96NA8 513 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 RPGRIP1LQ68CZ1 1315 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 KRT32Q14532 448 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 NBPF6Q5VWK0 638 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 NBPF5PQ86XG9 351 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-217ENST00000637988 SPATA32Q96LK8 384 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 NBPF4Q96M43 638 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 SETDB2Q96T68 719 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 PHAXQ9H814 394 aaKnown RBP7.16□□□□□ -1.26
SCN1A-217ENST00000637988 CYP46A1Q9Y6A2 500 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 PTCD1O75127 700 aaKnown RBP7.15□□□□□ -1.26
SCN1A-217ENST00000637988 TTC16Q8NEE8 873 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 AKNAQ7Z591 1439 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 FAM135AQ9P2D6 1515 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 CTNNA2P26232 953 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 KMT5BQ4FZB7 885 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 NYXQ9GZU5 481 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 ANKRD18BA2A2Z9 1011 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 RNF41Q9H4P4 317 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-217ENST00000637988 TEX14Q8IWB6 1497 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 CTCFLQ8NI51 663 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-217ENST00000637988 SMARCC1Q92922 1105 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-217ENST00000637988 TRMT112Q9UI30 125 aaKnown RBP7.15□□□□□ -1.26
SCN1A-217ENST00000637988 NOD1Q9Y239 953 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 ANKRD50Q9ULJ7 1429 aa7.15□□□□□ -1.26
SCN1A-217ENST00000637988 MINDY4BA8MYZ0 360 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 SERPINC1P01008 464 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 USP37Q86T82 979 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 AEBP1Q8IUX7 1158 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 NAPBQ9H115 298 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 RBM27Q9P2N5 1060 aaKnown RBP7.15□□□□□ -1.27
SCN1A-217ENST00000637988 RBM19Q9Y4C8 960 aaKnown RBP7.15□□□□□ -1.27
SCN1A-217ENST00000637988 UQCRHP07919 91 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 FERP16591 822 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 PDE4BQ07343 736 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 KIF22Q14807 665 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 AACSQ86V21 672 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 LMTK3Q96Q04 1460 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 ATAD2Q6PL18 1390 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 H0YHG0 523 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 SLC4A2P04920 1241 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 BICD1Q96G01 975 aa7.15□□□□□ -1.27
SCN1A-217ENST00000637988 CBFA2T2O43439 604 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 LARP1Q6PKG0 1096 aaKnown RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 U3KPZ7 1027 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 HOOK2Q96ED9 719 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 SETD1BQ9UPS6 1966 aaKnown RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 PRKAR2BP31323 418 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 KIF5BP33176 963 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 STK32BQ9NY57 414 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 PDIA4P13667 645 aaKnown RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 CBX1P83916 185 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 TWISTNBQ3B726 338 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 SREK1Q8WXA9 508 aaKnown RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 TFCP2L1Q9NZI6 479 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 NFE2L2Q16236 605 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 DDX23Q9BUQ8 820 aaKnown RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 LIG1P18858 919 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 TCIRG1Q13488 830 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 TAF4BQ92750 862 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 TTF1Q15361 905 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-217ENST00000637988 CATIPQ7Z7H3 387 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 SYCP3Q8IZU3 236 aa7.14□□□□□ -1.27
SCN1A-217ENST00000637988 ERICH3Q5RHP9 1530 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CT47B1P0C2W7 299 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-217ENST00000637988 UBA5Q9GZZ9 404 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 GPHNQ9NQX3 736 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CWC15Q9P013 229 aaKnown RBP7.13□□□□□ -1.27
SCN1A-217ENST00000637988 ERBINQ96RT1 1412 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 ME1P48163 572 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 NLRP5P59047 1200 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 SYNCQ9H7C4 482 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CFAP45Q9UL16 551 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 ANKRD30BQ9BXX2 1392 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 MYO15BQ96JP2 1530 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 TAX1BP1Q86VP1 789 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CD109Q6YHK3 1445 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 AFAP1Q8N556 730 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC174Q6PII3 467 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 ZNF771Q7L3S4 317 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-217ENST00000637988 LMAN1P49257 510 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC152Q4G0S7 254 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 LNPKQ9C0E8 428 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 INCENPQ9NQS7 918 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 PICK1Q9NRD5 415 aa7.13□□□□□ -1.27
SCN1A-217ENST00000637988 GPR162Q16538 588 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 ZNF804AQ7Z570 1209 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 LRRFIP2Q9Y608 721 aaKnown RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 RAD54L2Q9Y4B4 1467 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 EIF5P55010 431 aaKnown RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 AXDND1Q5T1B0 1012 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 FKBP15Q5T1M5 1219 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms