RNA–Protein interactions for RNA: ENST00000540783.5

RAPGEF4-215, Transcript of Rap guanine nucleotide exchange factor 4, human

TSL 2 BASIC

Gene RAPGEF4, Length 3,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF4-215	ENST00000540783	ADGRB2	O60241	1585 aa		7.01	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	HTATSF1	O43719	755 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	CD2BP2	O95400	341 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	LTBP4	Q8N2S1	1624 aa		7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	FAM83G	A6ND36	823 aa		7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	HSP90B1	P14625	803 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	EXOSC9	Q06265	439 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	EIF4A2	Q14240	407 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	SEPT12	Q8IYM1	358 aa		7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	CHD2	O14647	1828 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ITSN1	Q15811	1721 aa		7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	NCL	P19338	710 aa	Known RBP	7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	KIAA1211	Q6ZU35	1233 aa		7	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	STARD3NL	O95772	234 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	TRIM27	P14373	513 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	NFE2L2	Q16236	605 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	AKAP4	Q5JQC9	854 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	LARP1	Q6PKG0	1096 aa	Known RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	DCAF5	Q96JK2	942 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	TSPYL4	Q9UJ04	414 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ZNF330	Q9Y3S2	320 aa	Predicted RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	SSFA2	P28290	1259 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	SSH1	Q8WYL5	1049 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	NOB1	Q9ULX3	412 aa	Known RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ERBB3	P21860	1342 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	DDX58	O95786	925 aa	Known RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	GTF2E1	P29083	439 aa	Predicted RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	CCDC125	Q86Z20	511 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	USHBP1	Q8N6Y0	703 aa		6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	BCL11B	Q9C0K0	894 aa	Predicted RBP	6.99	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	IFT172	Q9UG01	1749 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	IPO8	O15397	1037 aa	Known RBP	6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	BARGIN	Q6ZT62	677 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	TMEM57	Q8N5G2	664 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	CRB1	P82279	1406 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	WDR63	Q8IWG1	891 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	GBP4	Q96PP9	640 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	EYA1	Q99502	592 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	FNBP4	Q8N3X1	1017 aa	Predicted RBP	6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	C1orf115	Q9H7X2	142 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	STK32B	Q9NY57	414 aa		6.98	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	NRXN3	Q9Y4C0	1643 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	STRC	Q7RTU9	1775 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783		A0A087WZG4	1122 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	NASP	P49321	788 aa	Predicted RBP	6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	DDX49	Q9Y6V7	483 aa	Known RBP	6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ARHGEF28	Q8N1W1	1705 aa	Known RBP	6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	DDIT3	P35638	169 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ANKRD45	Q5TZF3	282 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	MPRIP	Q6WCQ1	1025 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	AK7	Q96M32	723 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	FAM13B	Q9NYF5	915 aa		6.97	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	ADRA2B	P18089	450 aa		6.96	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	RAB3GAP1	Q15042	981 aa		6.96	□□□□□ -1.29
RAPGEF4-215	ENST00000540783	AAMP	Q13685	434 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	TAF7	Q15545	349 aa	Predicted RBP	6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ATF7IP	Q6VMQ6	1270 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	FLAD1	Q8NFF5	587 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	FMNL2	Q96PY5	1086 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	R3HCC1	Q9Y3T6	440 aa	Known RBP	6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	BTBD11	A6QL63	1104 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	APBA3	O96018	575 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	NEXN	Q0ZGT2	675 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	HDAC1	Q13547	482 aa	Predicted RBP	6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SMC5	Q8IY18	1101 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	CHAMP1	Q96JM3	812 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	DDX19B	Q9UMR2	479 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ZNF652	Q9Y2D9	606 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SPATA31A5	Q5VU36	1347 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SPATA31A7	Q8IWB4	1347 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	OVOS2	A0A0G2JMS6	1433 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	OVOS2	A0A0J9YW53	1432 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	OVOS2	Q6IE36	1432 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SSH2	Q76I76	1423 aa		6.96	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ERVV-2	B6SEH9	535 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	KIF6	Q6ZMV9	814 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	KIF2C	Q99661	725 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	AHDC1	Q5TGY3	1603 aa	Predicted RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SPATA31A1	Q5TZJ5	1347 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	MCTP1	Q6DN14	999 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ANP32B	Q92688	251 aa	Known RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	FMN2	Q9NZ56	1722 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	TPM2	P07951	284 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	MSN	P26038	577 aa	Known RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	IL13	P35225	146 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	RBM25	P49756	843 aa	Known RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	NBPF6	Q5VWK0	638 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	CAVIN1	Q6NZI2	390 aa	Known RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	CHD1L	Q86WJ1	897 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	NBPF4	Q96M43	638 aa		6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	CDK12	Q9NYV4	1490 aa	Predicted RBP	6.95	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ELL2	O00472	640 aa	Predicted RBP	6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	ZSCAN30	Q86W11	494 aa		6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SNX21	Q969T3	373 aa		6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	PHLPP1	O60346	1717 aa		6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	TMPO	P42166	694 aa	Known RBP	6.94	□□□□□ -1.3
RAPGEF4-215	ENST00000540783	SKOR2	Q2VWA4	1001 aa	Predicted RBP	6.94	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms