RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 ANP32AP39687 249 aaKnown RBP8.84□□□□□ -0.99
USP39-219ENST00000496047 DCCP43146 1447 aa8.84□□□□□ -0.99
USP39-219ENST00000496047 NKX1-1Q15270 411 aaPredicted RBP8.84□□□□□ -0.99
USP39-219ENST00000496047 ALDH1L2Q3SY69 923 aa8.84□□□□□ -0.99
USP39-219ENST00000496047 PHF8Q9UPP1 1060 aa8.84□□□□□ -0.99
USP39-219ENST00000496047 LMO7Q8WWI1 1683 aa8.84□□□□□ -0.99
USP39-219ENST00000496047 ALS2Q96Q42 1657 aa8.84□□□□□ -0.99
USP39-219ENST00000496047 STRCP1A6NGW2 1772 aa8.84□□□□□ -1
USP39-219ENST00000496047 NCOA3Q9Y6Q9 1424 aa8.83□□□□□ -1
USP39-219ENST00000496047 NLRP6P59044 892 aa8.83□□□□□ -1
USP39-219ENST00000496047 KCNH5Q8NCM2 988 aa8.83□□□□□ -1
USP39-219ENST00000496047 CLUAP1Q96AJ1 413 aa8.83□□□□□ -1
USP39-219ENST00000496047 XIRP1Q702N8 1843 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 EXOSC9Q06265 439 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 EIF4A2Q14240 407 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 C20orf194Q5TEA3 1177 aa8.82□□□□□ -1
USP39-219ENST00000496047 C3orf67Q6ZVT6 689 aa8.82□□□□□ -1
USP39-219ENST00000496047 DZIP1LQ8IYY4 767 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 ABTB2Q8N961 1025 aa8.82□□□□□ -1
USP39-219ENST00000496047 GAS2L2Q8NHY3 880 aa8.82□□□□□ -1
USP39-219ENST00000496047 RTF1Q92541 710 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 DDX19BQ9UMR2 479 aa8.82□□□□□ -1
USP39-219ENST00000496047 LAS1LQ9Y4W2 734 aaKnown RBP8.82□□□□□ -1
USP39-219ENST00000496047 CAMTA1Q9Y6Y1 1673 aa8.81□□□□□ -1
USP39-219ENST00000496047 MAP3K19Q56UN5 1328 aa8.81□□□□□ -1
USP39-219ENST00000496047 SLIT3O75094 1523 aa8.81□□□□□ -1
USP39-219ENST00000496047 NFAT5O94916 1531 aa8.81□□□□□ -1
USP39-219ENST00000496047 SOX12O15370 315 aa8.81□□□□□ -1
USP39-219ENST00000496047 PSME1Q06323 249 aa8.81□□□□□ -1
USP39-219ENST00000496047 SULT6B1Q6IMI4 303 aa8.81□□□□□ -1
USP39-219ENST00000496047 TSR2Q969E8 191 aaKnown RBP8.81□□□□□ -1
USP39-219ENST00000496047 ABCC6O95255 1503 aa8.8□□□□□ -1
USP39-219ENST00000496047 MVPQ14764 893 aaKnown RBP8.8□□□□□ -1
USP39-219ENST00000496047 ESCO1Q5FWF5 840 aa8.8□□□□□ -1
USP39-219ENST00000496047 PROSER2Q86WR7 435 aaPredicted RBP8.8□□□□□ -1
USP39-219ENST00000496047 RWDD1Q9H446 243 aaPredicted RBP8.8□□□□□ -1
USP39-219ENST00000496047 COG6Q9Y2V7 657 aa8.8□□□□□ -1
USP39-219ENST00000496047 KDM3BQ7LBC6 1761 aa8.8□□□□□ -1
USP39-219ENST00000496047 CRYBG1Q9Y4K1 1723 aa8.8□□□□□ -1
USP39-219ENST00000496047 IGSF1Q8N6C5 1336 aa8.8□□□□□ -1
USP39-219ENST00000496047 KDM2BQ8NHM5 1336 aa8.8□□□□□ -1
USP39-219ENST00000496047 KDRP35968 1356 aa8.79□□□□□ -1
USP39-219ENST00000496047 MKRN3Q13064 507 aaKnown RBP8.79□□□□□ -1
USP39-219ENST00000496047 ATF7IPQ6VMQ6 1270 aa8.79□□□□□ -1
USP39-219ENST00000496047 BCL2L13Q9BXK5 485 aa8.79□□□□□ -1
USP39-219ENST00000496047 MSH6P52701 1360 aa8.78□□□□□ -1
USP39-219ENST00000496047 PARP4Q9UKK3 1724 aaKnown RBP8.78□□□□□ -1
USP39-219ENST00000496047 HTATSF1O43719 755 aaKnown RBP8.78□□□□□ -1
USP39-219ENST00000496047 ATF3P18847 181 aa8.78□□□□□ -1
USP39-219ENST00000496047 FBLN1P23142 703 aa8.78□□□□□ -1
USP39-219ENST00000496047 EMP3P54852 163 aa8.78□□□□□ -1
USP39-219ENST00000496047 BRPF1P55201 1214 aaPredicted RBP8.78□□□□□ -1
USP39-219ENST00000496047 ITPRIPQ8IWB1 547 aa8.78□□□□□ -1
USP39-219ENST00000496047 PANK1Q8TE04 598 aa8.78□□□□□ -1
USP39-219ENST00000496047 CHMP4AQ9BY43 222 aa8.78□□□□□ -1
USP39-219ENST00000496047 API5Q9BZZ5 524 aaKnown RBP8.78□□□□□ -1
USP39-219ENST00000496047 SCN11AQ9UI33 1791 aa8.78□□□□□ -1
USP39-219ENST00000496047 KIAA0232Q92628 1395 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 SIPA1L3O60292 1781 aaPredicted RBP8.77□□□□□ -1.01
USP39-219ENST00000496047 HOXC9P31274 260 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 TWISTNBQ3B726 338 aaPredicted RBP8.77□□□□□ -1.01
USP39-219ENST00000496047 HSP90AB2PQ58FF8 381 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 SSH1Q8WYL5 1049 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 ARHGAP45Q92619 1136 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 PHACTR3Q96KR7 559 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 C19orf44Q9H6X5 657 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 SOS1Q07889 1333 aaPredicted RBP8.77□□□□□ -1.01
USP39-219ENST00000496047 C1orf167Q5SNV9 1468 aa8.77□□□□□ -1.01
USP39-219ENST00000496047 MYT1Q01538 1121 aa8.76□□□□□ -1.01
USP39-219ENST00000496047 DDRGK1Q96HY6 314 aa8.76□□□□□ -1.01
USP39-219ENST00000496047 L3MBTL3Q96JM7 780 aaPredicted RBP8.76□□□□□ -1.01
USP39-219ENST00000496047 MBIPQ9NS73 344 aa8.76□□□□□ -1.01
USP39-219ENST00000496047 NCAPD2Q15021 1401 aa8.76□□□□□ -1.01
USP39-219ENST00000496047 AK9Q5TCS8 1911 aa8.76□□□□□ -1.01
USP39-219ENST00000496047 MAP3K5Q99683 1374 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 ABCA3Q99758 1704 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 MST1RQ04912 1400 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 ZNF853P0CG23 659 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 TRIM27P14373 513 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 FAM161AQ3B820 660 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 CADPS2Q86UW7 1296 aa8.75□□□□□ -1.01
USP39-219ENST00000496047 PDCD7Q8N8D1 485 aaKnown RBP8.75□□□□□ -1.01
USP39-219ENST00000496047 NOB1Q9ULX3 412 aaKnown RBP8.75□□□□□ -1.01
USP39-219ENST00000496047 GNAT3A8MTJ3 354 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 PDE4AP27815 886 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 NUTM2GQ5VZR2 741 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 AEBP1Q8IUX7 1158 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 IP6K1Q92551 441 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 BABAM1Q9NWV8 329 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.74□□□□□ -1.011e-7■□□□□ 11
USP39-219ENST00000496047 NPHP3Q7Z494 1330 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 PKD1L3Q7Z443 1732 aa8.74□□□□□ -1.01
USP39-219ENST00000496047 OVOS2A0A0G2JMS6 1433 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 ZBTB7CA1YPR0 619 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 VAMP4O75379 141 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 RGS3P49796 1198 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 LMOD2Q6P5Q4 547 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 EYA1Q99502 592 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 BACH2Q9BYV9 841 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 UPF2Q9HAU5 1272 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms