RNA–Protein interactions for RNA: ENST00000489469.5

SMIM11A-206, Transcript of small integral membrane protein 11A, humanhuman

TSL 2

Gene SMIM11A, Length 780 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-206ENST00000489469 MPRIPQ6WCQ1 1025 aa20.47■□□□□ 0.87
SMIM11A-206ENST00000489469 TMOD3Q9NYL9 352 aa20.47■□□□□ 0.87
SMIM11A-206ENST00000489469 PLSCR1O15162 318 aa20.46■□□□□ 0.87
SMIM11A-206ENST00000489469 RTF1Q92541 710 aaKnown RBP20.46■□□□□ 0.87
SMIM11A-206ENST00000489469 MRC1P22897 1456 aa20.45■□□□□ 0.86
SMIM11A-206ENST00000489469 RNMTO43148 476 aaKnown RBP20.45■□□□□ 0.86
SMIM11A-206ENST00000489469 CABP4P57796 275 aa20.44■□□□□ 0.86
SMIM11A-206ENST00000489469 PTF1AQ7RTS3 328 aa20.44■□□□□ 0.86
SMIM11A-206ENST00000489469 CCDC146Q8IYE0 955 aa20.44■□□□□ 0.86
SMIM11A-206ENST00000489469 LMOD3Q0VAK6 560 aa20.43■□□□□ 0.86
SMIM11A-206ENST00000489469 LY75O60449 1722 aa20.43■□□□□ 0.86
SMIM11A-206ENST00000489469 SIPA1L3O60292 1781 aaPredicted RBP20.43■□□□□ 0.86
SMIM11A-206ENST00000489469 RREB1Q92766 1687 aa20.42■□□□□ 0.86
SMIM11A-206ENST00000489469 TMPOP42166 694 aaKnown RBP20.42■□□□□ 0.86
SMIM11A-206ENST00000489469 PIGBQ92521 554 aa20.42■□□□□ 0.86
SMIM11A-206ENST00000489469 SMARCC1Q92922 1105 aaPredicted RBP20.42■□□□□ 0.86
SMIM11A-206ENST00000489469 CEMIPQ8WUJ3 1361 aa20.42■□□□□ 0.86
SMIM11A-206ENST00000489469 TEFQ10587 303 aa20.41■□□□□ 0.86
SMIM11A-206ENST00000489469 DEFB132Q7Z7B7 95 aa20.41■□□□□ 0.86
SMIM11A-206ENST00000489469 MIER1Q8N108 512 aa20.41■□□□□ 0.86
SMIM11A-206ENST00000489469 SLC52A2Q9HAB3 445 aa20.41■□□□□ 0.86
SMIM11A-206ENST00000489469 LGR6Q9HBX8 967 aa20.41■□□□□ 0.86
SMIM11A-206ENST00000489469 RIPK4P57078 832 aa20.4■□□□□ 0.86
SMIM11A-206ENST00000489469 EN1Q05925 392 aaPredicted RBP20.4■□□□□ 0.86
SMIM11A-206ENST00000489469 IL17REQ8NFR9 667 aa20.4■□□□□ 0.86
SMIM11A-206ENST00000489469 CAMKK2Q96RR4 588 aa20.4■□□□□ 0.86
SMIM11A-206ENST00000489469 HMGB2P26583 209 aaKnown RBP20.39■□□□□ 0.85
SMIM11A-206ENST00000489469 FAM9BQ8IZU0 186 aa20.39■□□□□ 0.85
SMIM11A-206ENST00000489469 NFATC2IPQ8NCF5 419 aa20.39■□□□□ 0.85
SMIM11A-206ENST00000489469 PAPPAQ13219 1627 aa20.38■□□□□ 0.85
SMIM11A-206ENST00000489469 PALLDQ8WX93 1383 aa20.37■□□□□ 0.85
SMIM11A-206ENST00000489469 NUP188Q5SRE5 1749 aa20.37■□□□□ 0.85
SMIM11A-206ENST00000489469 EZH2Q15910 746 aaKnown RBP20.37■□□□□ 0.85
SMIM11A-206ENST00000489469 APAF1O14727 1248 aa20.36■□□□□ 0.85
SMIM11A-206ENST00000489469 SLC27A3Q5K4L6 730 aa20.36■□□□□ 0.85
SMIM11A-206ENST00000489469 MCM10Q7L590 875 aa20.36■□□□□ 0.85
SMIM11A-206ENST00000489469 ZNF831Q5JPB2 1677 aa20.35■□□□□ 0.85
SMIM11A-206ENST00000489469 TXNRD1Q16881 649 aa20.35■□□□□ 0.85
SMIM11A-206ENST00000489469 NEUROD2Q15784 382 aa20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 ATG3Q9NT62 314 aa20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 ASAP1Q9ULH1 1129 aa20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 RRP7AQ9Y3A4 280 aaKnown RBP20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 TAF1LQ8IZX4 1826 aa20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 UBR2Q8IWV8 1755 aa20.34■□□□□ 0.85
SMIM11A-206ENST00000489469 DCTN1Q14203 1278 aa20.33■□□□□ 0.85
SMIM11A-206ENST00000489469 NGEFQ8N5V2 710 aa20.33■□□□□ 0.85
SMIM11A-206ENST00000489469 CAPN15O75808 1086 aa20.32■□□□□ 0.84
SMIM11A-206ENST00000489469 TAF7Q15545 349 aaPredicted RBP20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 TTC5Q8N0Z6 440 aa20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 PROM2Q8N271 834 aa20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 CCNL1Q9UK58 526 aaPredicted RBP20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 C5P01031 1676 aa20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 CICQ96RK0 1608 aaPredicted RBP20.31■□□□□ 0.84
SMIM11A-206ENST00000489469 LOC102724428A0A0B4J2F2 783 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 BTBD11A6QL63 1104 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 SIK1P57059 783 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 CALD1Q05682 793 aaKnown RBP20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 TRIM35Q9UPQ4 493 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 KDM3BQ7LBC6 1761 aa20.3■□□□□ 0.84
SMIM11A-206ENST00000489469 NBPF14Q5TI25 921 aa20.29■□□□□ 0.84
SMIM11A-206ENST00000489469 SPINK5Q9NQ38 1064 aaPredicted RBP20.29■□□□□ 0.84
SMIM11A-206ENST00000489469 BABAM1Q9NWV8 329 aa20.29■□□□□ 0.84
SMIM11A-206ENST00000489469 ZNF790Q6PG37 636 aa20.28■□□□□ 0.84
SMIM11A-206ENST00000489469 RBM42Q9BTD8 480 aaKnown RBP20.27■□□□□ 0.84
SMIM11A-206ENST00000489469 THUMPD2Q9BTF0 503 aaKnown RBP20.27■□□□□ 0.84
SMIM11A-206ENST00000489469 KCPQ6ZWJ8 1503 aa20.27■□□□□ 0.83
SMIM11A-206ENST00000489469 ATP6V1AP38606 617 aa20.26■□□□□ 0.83
SMIM11A-206ENST00000489469 SLC39A6Q13433 755 aa20.26■□□□□ 0.83
SMIM11A-206ENST00000489469 COL5A3P25940 1745 aaPredicted RBP20.26■□□□□ 0.83
SMIM11A-206ENST00000489469 PTCD1O75127 700 aaKnown RBP20.25■□□□□ 0.83
SMIM11A-206ENST00000489469 VSIG10Q8N0Z9 540 aa20.25■□□□□ 0.83
SMIM11A-206ENST00000489469 LRRC4BQ9NT99 713 aa20.25■□□□□ 0.83
SMIM11A-206ENST00000489469 TJP1Q07157 1748 aa20.24■□□□□ 0.83
SMIM11A-206ENST00000489469 FMNL2Q96PY5 1086 aa20.24■□□□□ 0.83
SMIM11A-206ENST00000489469 C4BP0C0L5 1744 aa20.24■□□□□ 0.83
SMIM11A-206ENST00000489469 QSER1Q2KHR3 1735 aa20.24■□□□□ 0.83
SMIM11A-206ENST00000489469 STK32BQ9NY57 414 aa20.23■□□□□ 0.83
SMIM11A-206ENST00000489469 WWC1Q8IX03 1113 aa20.22■□□□□ 0.83
SMIM11A-206ENST00000489469 TEX13AQ9BXU3 409 aaPredicted RBP20.22■□□□□ 0.83
SMIM11A-206ENST00000489469 TSPYL4Q9UJ04 414 aa20.22■□□□□ 0.83
SMIM11A-206ENST00000489469 HEG1Q9ULI3 1381 aa20.21■□□□□ 0.83
SMIM11A-206ENST00000489469 ZNF496Q96IT1 587 aaPredicted RBP20.21■□□□□ 0.83
SMIM11A-206ENST00000489469 CFAP44Q96MT7 982 aa20.21■□□□□ 0.83
SMIM11A-206ENST00000489469 CHL1O00533 1208 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 KCNQ4P56696 695 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 GNAI1P63096 354 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 SLC15A2Q16348 729 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 SLC4A9Q96Q91 983 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 IFT57Q9NWB7 429 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 IL16Q14005 1332 aa20.2■□□□□ 0.82
SMIM11A-206ENST00000489469 LAMB4A4D0S4 1761 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 TUBGCP6Q96RT7 1819 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 ITPK1Q13572 414 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 WDR63Q8IWG1 891 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 MIS18AQ9NYP9 233 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 UBR3Q6ZT12 1888 aa20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 MYH14Q7Z406 1995 aaKnown RBP20.19■□□□□ 0.82
SMIM11A-206ENST00000489469 KCNQ3O43525 872 aa20.18■□□□□ 0.82
SMIM11A-206ENST00000489469 LINC00116Q8NCU8 138 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms