RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 SMTNL1A8MU46 457 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 K7ELQ4 463 aaPredicted RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 MAP3K12Q12852 859 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 EIF5P55010 431 aaKnown RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 ZNF444Q8N0Y2 327 aaPredicted RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 ZNF397Q8NF99 534 aaPredicted RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 TSG101Q99816 390 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 MYD88Q99836 296 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 SPC24Q8NBT2 197 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 PPM1FP49593 454 aaPredicted RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 IFIT5Q13325 482 aaKnown RBP14.55□□□□□ -0.08
PTPRE-208ENST00000479896 CCDC150Q8NCX0 1101 aa14.55□□□□□ -0.08
PTPRE-208ENST00000479896 MINDY4BA8MYZ0 360 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 NFKBIBQ15653 356 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 IL1RAPL2Q9NP60 686 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 CCDC196A0A1B0GTZ2 297 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 TRMT112Q9UI30 125 aaKnown RBP14.54□□□□□ -0.08
PTPRE-208ENST00000479896 ERLIN1O75477 346 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 LEKR1Q6ZMV7 388 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 NAPBQ9H115 298 aa14.54□□□□□ -0.08
PTPRE-208ENST00000479896 EXOC5O00471 708 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 PHAXQ9H814 394 aaKnown RBP14.53□□□□□ -0.08
PTPRE-208ENST00000479896 ANKRD18BA2A2Z9 1011 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 CTCFLQ8NI51 663 aaPredicted RBP14.53□□□□□ -0.08
PTPRE-208ENST00000479896 KIF1BPQ96EK5 621 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 MYCNP04198 464 aaPredicted RBP14.53□□□□□ -0.08
PTPRE-208ENST00000479896 MPRIPQ6WCQ1 1025 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 MTERF4Q7Z6M4 381 aaKnown RBP14.53□□□□□ -0.08
PTPRE-208ENST00000479896 RAB34Q9BZG1 259 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 GOLGA6L7A0A1B0GV03 622 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 CCDC112Q8NEF3 446 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 TMEM266Q2M3C6 531 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 VSIG10Q8N0Z9 540 aa14.53□□□□□ -0.08
PTPRE-208ENST00000479896 DUSP27Q5VZP5 1158 aa14.52□□□□□ -0.08
PTPRE-208ENST00000479896 NUTM1Q86Y26 1132 aa14.52□□□□□ -0.08
PTPRE-208ENST00000479896 NSD3Q9BZ95 1437 aa14.52□□□□□ -0.08
PTPRE-208ENST00000479896 TAX1BP1Q86VP1 789 aa14.52□□□□□ -0.09
PTPRE-208ENST00000479896 KIAA1328Q86T90 577 aa14.52□□□□□ -0.09
PTPRE-208ENST00000479896 TAF7Q15545 349 aaPredicted RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 MPHOSPH6Q99547 160 aaKnown RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 UPF3BQ9BZI7 483 aaKnown RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 RNF41Q9H4P4 317 aaPredicted RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 ZNF219Q9P2Y4 722 aaPredicted RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 PHF8Q9UPP1 1060 aa14.51□□□□□ -0.09
PTPRE-208ENST00000479896 A0A087WZG4 1122 aa14.51□□□□□ -0.09
PTPRE-208ENST00000479896 TEX13AQ9BXU3 409 aaPredicted RBP14.51□□□□□ -0.09
PTPRE-208ENST00000479896 NUP62CLQ9H1M0 184 aa14.51□□□□□ -0.09
PTPRE-208ENST00000479896 ANAPC15P60006 121 aa14.5□□□□□ -0.09
PTPRE-208ENST00000479896 IQCA1Q86XH1 822 aa14.5□□□□□ -0.09
PTPRE-208ENST00000479896 GLRX3O76003 335 aaKnown RBP14.5□□□□□ -0.09
PTPRE-208ENST00000479896 CASTP20810 708 aaKnown RBP14.5□□□□□ -0.09
PTPRE-208ENST00000479896 EPB41L2O43491 1005 aaKnown RBP14.5□□□□□ -0.09
PTPRE-208ENST00000479896 HMGN5P82970 282 aaKnown RBP14.5□□□□□ -0.09
PTPRE-208ENST00000479896 FKBP15Q5T1M5 1219 aa14.5□□□□□ -0.09
PTPRE-208ENST00000479896 C6orf229H3BNL8 230 aa14.5□□□□□ -0.09
PTPRE-208ENST00000479896 KIF20AO95235 890 aa14.5□□□□□ -0.09
PTPRE-208ENST00000479896 EIF3JO75822 258 aaKnown RBP14.49□□□□□ -0.09
PTPRE-208ENST00000479896 BAG4O95429 457 aaKnown RBP14.49□□□□□ -0.09
PTPRE-208ENST00000479896 FEZ1Q99689 392 aa14.49□□□□□ -0.09
PTPRE-208ENST00000479896 RANBP6O60518 1105 aaKnown RBP14.49□□□□□ -0.09
PTPRE-208ENST00000479896 FGFR1OPO95684 399 aaKnown RBP14.49□□□□□ -0.09
PTPRE-208ENST00000479896 DRC1Q96MC2 740 aa14.49□□□□□ -0.09
PTPRE-208ENST00000479896 CENPHQ9H3R5 247 aa14.49□□□□□ -0.09
PTPRE-208ENST00000479896 LDHCP07864 332 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 CABP5Q9NP86 173 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 HYPKQ9NX55 129 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 KIAA0754O94854 1291 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 ST5P78524 1137 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 UBA5Q9GZZ9 404 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 MYO1BO43795 1136 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 TMPOP42166 694 aaKnown RBP14.48□□□□□ -0.09
PTPRE-208ENST00000479896 MCM10Q7L590 875 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 VPS36Q86VN1 386 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 HMGB1P09429 215 aaKnown RBP14.48□□□□□ -0.09
PTPRE-208ENST00000479896 CDC5LQ99459 802 aaKnown RBP14.48□□□□□ -0.09
PTPRE-208ENST00000479896 DDX46Q7L014 1031 aaKnown RBP14.48□□□□□ -0.09
PTPRE-208ENST00000479896 MIS18AQ9NYP9 233 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 SLC12A7Q9Y666 1083 aa14.48□□□□□ -0.09
PTPRE-208ENST00000479896 MX1P20591 662 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 DDX11Q96FC9 970 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 CCDC141Q6ZP82 1450 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 CCDC148Q8NFR7 591 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 CD109Q6YHK3 1445 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 SPA17Q15506 151 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 CCDC91Q7Z6B0 441 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 HLA-DOAP06340 250 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 USHBP1Q8N6Y0 703 aa14.47□□□□□ -0.09
PTPRE-208ENST00000479896 LRRFIP2Q9Y608 721 aaKnown RBP14.47□□□□□ -0.09
PTPRE-208ENST00000479896 FAM177A1Q8N128 213 aaPredicted RBP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 CCDC12Q8WUD4 166 aaPredicted RBP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 SPTY2D1Q68D10 685 aaPredicted RBP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 PPP1R42Q7Z4L9 355 aa14.46□□□□□ -0.09
PTPRE-208ENST00000479896 WAPLQ7Z5K2 1190 aa14.46□□□□□ -0.09
PTPRE-208ENST00000479896 CCDC194A0A1B0GVG4 234 aa14.46□□□□□ -0.09
PTPRE-208ENST00000479896 SSRP1Q08945 709 aaKnown RBP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 TTF1Q15361 905 aaPredicted RBP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 CATIPQ7Z7H3 387 aa14.46□□□□□ -0.09
PTPRE-208ENST00000479896 ZNF622Q969S3 477 aaKnown RBP eCLIP14.46□□□□□ -0.09
PTPRE-208ENST00000479896 ZNF213O14771 459 aa14.46□□□□□ -0.1
PTPRE-208ENST00000479896 RFC4P35249 363 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms