RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 C6orf229H3BNL8 230 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 GNPATO15228 680 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 CAVIN4Q5BKX8 364 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 ANKRD13DQ6ZTN6 518 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 MAP3K5Q99683 1374 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 ATP5J2-PTCD1G3V325 749 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 IFIT1P09914 478 aaKnown RBP11.24□□□□□ -0.61
PTPRE-202ENST00000306042 PRIM1P49642 420 aaKnown RBP11.24□□□□□ -0.61
PTPRE-202ENST00000306042 NFXL1Q6ZNB6 911 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 CDC5LQ99459 802 aaKnown RBP11.24□□□□□ -0.61
PTPRE-202ENST00000306042 KIF1BO60333 1816 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 SPATA31E1Q6ZUB1 1445 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 ANKRD18BA2A2Z9 1011 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 RASSF8Q8NHQ8 419 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 LRRCC1Q9C099 1032 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 CDC42BPBQ9Y5S2 1711 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 SLC3A2P08195 630 aaKnown RBP11.24□□□□□ -0.61
PTPRE-202ENST00000306042 SSH1Q8WYL5 1049 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 MAP3K2Q9Y2U5 619 aa11.24□□□□□ -0.61
PTPRE-202ENST00000306042 F6X3S4 739 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 RNMTO43148 476 aaKnown RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 ANXA1P04083 346 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 CHAF1AQ13111 956 aaPredicted RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 TRAPPC3LQ5T215 181 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 MVPQ14764 893 aaKnown RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 FKBP4Q02790 459 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 DZIP3Q86Y13 1208 aaKnown RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 CCAR1Q8IX12 1150 aaKnown RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 GCC1Q96CN9 775 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 NIP7Q9Y221 180 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 MYOM2P54296 1465 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 INTS3Q68E01 1043 aaKnown RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 ZSCAN29Q8IWY8 852 aaPredicted RBP11.23□□□□□ -0.61
PTPRE-202ENST00000306042 RAI14Q9P0K7 980 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 AKAP2Q9Y2D5 859 aa11.23□□□□□ -0.61
PTPRE-202ENST00000306042 KIAA0232Q92628 1395 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 CPLX1O14810 134 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 IKQ13123 557 aaPredicted RBP11.22□□□□□ -0.61
PTPRE-202ENST00000306042 AACSQ86V21 672 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 FAM135BQ49AJ0 1406 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 POLR3AO14802 1390 aaPredicted RBP11.22□□□□□ -0.61
PTPRE-202ENST00000306042 PI4KAP2A4QPH2 592 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 PI4KAP1Q8N8J0 262 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 LRP2BPQ9P2M1 347 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 DIP2CQ9Y2E4 1556 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 IL16Q14005 1332 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 XAGE3Q8WTP9 111 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 TCEAL9Q9UHQ7 104 aa11.22□□□□□ -0.61
PTPRE-202ENST00000306042 ZSCAN25Q6NSZ9 544 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 TPTE2Q6XPS3 522 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 COPS6Q7L5N1 327 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 RPAP2Q8IXW5 612 aaPredicted RBP11.21□□□□□ -0.61
PTPRE-202ENST00000306042 FAM184AQ8NB25 1140 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 NLRP3Q96P20 1036 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 ABCF2Q9UG63 623 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 HIP1O00291 1037 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 UBE3BQ7Z3V4 1068 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 CCDC34Q96HJ3 373 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 SPINK5Q9NQ38 1064 aaPredicted RBP11.21□□□□□ -0.61
PTPRE-202ENST00000306042 CHPF2Q9P2E5 772 aa11.21□□□□□ -0.61
PTPRE-202ENST00000306042 ARHGEF40Q8TER5 1519 aa11.21□□□□□ -0.62
PTPRE-202ENST00000306042 NYXQ9GZU5 481 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 PTPRCP08575 1304 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 TMEM57Q8N5G2 664 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 NACAP1Q9BZK3 213 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 PIP4K2AP48426 406 aaPredicted RBP11.2□□□□□ -0.62
PTPRE-202ENST00000306042 CCDC152Q4G0S7 254 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 MTMR7Q9Y216 660 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 SBNO2Q9Y2G9 1366 aa11.2□□□□□ -0.62
PTPRE-202ENST00000306042 RARSP54136 660 aaKnown RBP11.19□□□□□ -0.62
PTPRE-202ENST00000306042 SART3Q15020 963 aaKnown RBP11.19□□□□□ -0.62
PTPRE-202ENST00000306042 H3BQV1 296 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 IFFO2Q5TF58 517 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 LDHAL6AQ6ZMR3 332 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 UNC5CLQ8IV45 518 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 AGLP35573 1532 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 SLC5A1P13866 664 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 TRIM29Q14134 588 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 PHACTR3Q96KR7 559 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 IL1RAPL2Q9NP60 686 aa11.19□□□□□ -0.62
PTPRE-202ENST00000306042 IL13P35225 146 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 FAM196AQ6ZSG2 479 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 WWC3Q9ULE0 1092 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 CLTCQ00610 1675 aaKnown RBP11.18□□□□□ -0.62
PTPRE-202ENST00000306042 IDH1O75874 414 aaKnown RBP11.18□□□□□ -0.62
PTPRE-202ENST00000306042 PLCB2Q00722 1185 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 ATP2B2Q01814 1243 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 KRT27Q7Z3Y8 459 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 UTP14AQ9BVJ6 771 aaKnown RBP11.18□□□□□ -0.62
PTPRE-202ENST00000306042 PARD3Q8TEW0 1356 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 IQGAP3Q86VI3 1631 aa11.18□□□□□ -0.62
PTPRE-202ENST00000306042 ZNF790Q6PG37 636 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 CARD10Q9BWT7 1032 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 ADGRB3O60242 1522 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 ADGRL3Q9HAR2 1447 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 RRP12Q5JTH9 1297 aaKnown RBP11.17□□□□□ -0.62
PTPRE-202ENST00000306042 SPATA31A3Q5VYP0 1347 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 CDC45O75419 566 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 ARHGEF25Q86VW2 580 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 RSPH6AQ9H0K4 717 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms