RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KRT18P05783 430 aaKnown RBP15.04■□□□□ -0
USP40-201ENST00000251722 SAMD1Q6SPF0 538 aaPredicted RBP15.04■□□□□ -0
USP40-201ENST00000251722 DBF4Q9UBU7 674 aaPredicted RBP15.04■□□□□ -0
USP40-201ENST00000251722 BCCIPQ9P287 314 aaKnown RBP eCLIP15.04■□□□□ -0
USP40-201ENST00000251722 UNC13AQ9UPW8 1703 aa15.04■□□□□ -0
USP40-201ENST00000251722 SLC5A1P13866 664 aa15.03■□□□□ -0
USP40-201ENST00000251722 TRIM21P19474 475 aaKnown RBP15.03■□□□□ -0
USP40-201ENST00000251722 LRP2BPQ9P2M1 347 aa15.03■□□□□ -0
USP40-201ENST00000251722 PDZRN3Q9UPQ7 1066 aa15.03■□□□□ -0
USP40-201ENST00000251722 PPP4R3BQ5MIZ7 849 aa15.03■□□□□ -0
USP40-201ENST00000251722 IL16Q14005 1332 aa15.03■□□□□ -0
USP40-201ENST00000251722 RPRD2Q5VT52 1461 aaKnown RBP15.03■□□□□ -0
USP40-201ENST00000251722 TDO2P48775 406 aa15.03■□□□□ -0
USP40-201ENST00000251722 HSP90B2PQ58FF3 399 aa15.03■□□□□ -0
USP40-201ENST00000251722 RRP12Q5JTH9 1297 aaKnown RBP15.03■□□□□ -0
USP40-201ENST00000251722 DUSP27Q5VZP5 1158 aa15.03■□□□□ -0
USP40-201ENST00000251722 WAPLQ7Z5K2 1190 aa15.03■□□□□ -0
USP40-201ENST00000251722 PLCD3Q8N3E9 789 aa15.03■□□□□ -0
USP40-201ENST00000251722 BMP2KQ9NSY1 1161 aaPredicted RBP15.03■□□□□ -0
USP40-201ENST00000251722 PRDM10Q9NQV6 1147 aa15.03■□□□□ -0
USP40-201ENST00000251722 EIF2AK4Q9P2K8 1649 aaKnown RBP15.03■□□□□ -0
USP40-201ENST00000251722 FAM193AP78312 1265 aa15.03■□□□□ -0
USP40-201ENST00000251722 TNIP1Q15025 636 aa15.03■□□□□ -0
USP40-201ENST00000251722 RPGRQ92834 1020 aaKnown RBP15.03■□□□□ -0
USP40-201ENST00000251722 ATP10BO94823 1461 aa15.03■□□□□ -0
USP40-201ENST00000251722 IMMTQ16891 758 aaKnown RBP15.02■□□□□ -0
USP40-201ENST00000251722 METTL24Q5JXM2 366 aa15.02■□□□□ -0
USP40-201ENST00000251722 SHANK2Q9UPX8 1470 aa15.02■□□□□ -0
USP40-201ENST00000251722 PPP1R42Q7Z4L9 355 aa15.02■□□□□ -0
USP40-201ENST00000251722 GPATCH11Q8N954 259 aa15.02■□□□□ -0
USP40-201ENST00000251722 GLRX3O76003 335 aaKnown RBP15.02□□□□□ -0.01
USP40-201ENST00000251722 LDHCP07864 332 aa15.02□□□□□ -0.01
USP40-201ENST00000251722 STK38Q15208 465 aa15.02□□□□□ -0.01
USP40-201ENST00000251722 CDC5LQ99459 802 aaKnown RBP15.02□□□□□ -0.01
USP40-201ENST00000251722 CTTNBP2Q8WZ74 1663 aa15.02□□□□□ -0.01
USP40-201ENST00000251722 TSR2Q969E8 191 aaKnown RBP15.02□□□□□ -0.01
USP40-201ENST00000251722 EHMT1Q9H9B1 1298 aa15.02□□□□□ -0.01
USP40-201ENST00000251722 KIF20AO95235 890 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 SYCP1Q15431 976 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 CEP131Q9UPN4 1083 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 AIDAQ96BJ3 306 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 SLC4A3P48751 1232 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 PLCD4Q9BRC7 762 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 RALGAPBQ86X10 1494 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 RIMS2Q9UQ26 1411 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 CCDC196A0A1B0GTZ2 297 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 ANKRD18BA2A2Z9 1011 aa15.01□□□□□ -0.01
USP40-201ENST00000251722 IFIT5Q13325 482 aaKnown RBP15.01□□□□□ -0.01
USP40-201ENST00000251722 ZSCAN29Q8IWY8 852 aaPredicted RBP15.01□□□□□ -0.01
USP40-201ENST00000251722 WDR33Q9C0J8 1336 aaKnown RBP15□□□□□ -0.01
USP40-201ENST00000251722 CLCN1P35523 988 aa15□□□□□ -0.01
USP40-201ENST00000251722 BLOC1S2Q6QNY1 142 aa15□□□□□ -0.01
USP40-201ENST00000251722 CHD1LQ86WJ1 897 aa15□□□□□ -0.01
USP40-201ENST00000251722 RNF41Q9H4P4 317 aaPredicted RBP15□□□□□ -0.01
USP40-201ENST00000251722 KIAA0556O60303 1618 aa15□□□□□ -0.01
USP40-201ENST00000251722 NEK4P51957 841 aa15□□□□□ -0.01
USP40-201ENST00000251722 MAP3K12Q12852 859 aa15□□□□□ -0.01
USP40-201ENST00000251722 SPTY2D1Q68D10 685 aaPredicted RBP15□□□□□ -0.01
USP40-201ENST00000251722 ZSCAN30Q86W11 494 aa15□□□□□ -0.01
USP40-201ENST00000251722 DESP17661 470 aa15□□□□□ -0.01
USP40-201ENST00000251722 XPCQ01831 940 aaPredicted RBP15□□□□□ -0.01
USP40-201ENST00000251722 TTF1Q15361 905 aaPredicted RBP15□□□□□ -0.01
USP40-201ENST00000251722 FBXO31Q5XUX0 539 aaPredicted RBP15□□□□□ -0.01
USP40-201ENST00000251722 DYNC1I1O14576 645 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 SLFN5Q08AF3 891 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 MNS1Q8NEH6 495 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 U3KPZ7 1027 aaPredicted RBP14.99□□□□□ -0.01
USP40-201ENST00000251722 TRPM2O94759 1503 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 MPHOSPH10O00566 681 aaKnown RBP14.99□□□□□ -0.01
USP40-201ENST00000251722 CAVIN1Q6NZI2 390 aaKnown RBP14.99□□□□□ -0.01
USP40-201ENST00000251722 ADGRF5Q8IZF2 1346 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 HOMER1Q86YM7 354 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 CDCA7Q9BWT1 371 aaPredicted RBP14.99□□□□□ -0.01
USP40-201ENST00000251722 FOXO3O43524 673 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 ATP2B2Q01814 1243 aa14.99□□□□□ -0.01
USP40-201ENST00000251722 FKBP4Q02790 459 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP40-201ENST00000251722 ZNF622Q969S3 477 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP40-201ENST00000251722 PHAXQ9H814 394 aaKnown RBP14.98□□□□□ -0.01
USP40-201ENST00000251722 ST5P78524 1137 aa14.98□□□□□ -0.01
USP40-201ENST00000251722 TRAF1Q13077 416 aa14.98□□□□□ -0.01
USP40-201ENST00000251722 ABCC2Q92887 1545 aa14.98□□□□□ -0.01
USP40-201ENST00000251722 SIL1Q9H173 461 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 KIF21AQ7Z4S6 1674 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 CFAP45Q9UL16 551 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 NME9Q86XW9 330 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 DNAAF4Q8WXU2 420 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 PIK3R4Q99570 1358 aa14.97□□□□□ -0.01
USP40-201ENST00000251722 WDR62O43379 1518 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 ADAMTS2O95450 1211 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 ZNHIT6Q9NWK9 470 aaKnown RBP14.96□□□□□ -0.01
USP40-201ENST00000251722 SOS1Q07889 1333 aaPredicted RBP14.96□□□□□ -0.01
USP40-201ENST00000251722 CCDC178Q5BJE1 867 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 ZNF592Q92610 1267 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 NAP1L1P55209 391 aaKnown RBP14.96□□□□□ -0.01
USP40-201ENST00000251722 GSTO1P78417 241 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 GRPEL1Q9HAV7 217 aa14.96□□□□□ -0.01
USP40-201ENST00000251722 TRMT112Q9UI30 125 aaKnown RBP14.96□□□□□ -0.01
USP40-201ENST00000251722 SNRPA1P09661 255 aaKnown RBP14.96□□□□□ -0.02
USP40-201ENST00000251722 FOXD4L6Q3SYB3 417 aaPredicted RBP14.96□□□□□ -0.02
USP40-201ENST00000251722 FOXD4L3Q6VB84 417 aaPredicted RBP14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms