Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Rprl3-201ENSMUST00000157400 290 ntBASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Gm1818-201ENSMUST00000169406 1184 ntBASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Mir3081-201ENSMUST00000175305 84 ntBASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Ddx56Q9D0R4 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Gm7977-201ENSMUST00000193787 748 ntBASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Ddx56Q9D0R4 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Ddx56Q9D0R4 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms