Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Rpa1Q8VEE4 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rpa1Q8VEE4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Gm5643-201ENSMUST00000117081 966 ntBASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Gm7791-201ENSMUST00000219066 539 ntBASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Rpa1Q8VEE4 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rpa1Q8VEE4 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Gm13186-201ENSMUST00000118031 316 ntBASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rpa1Q8VEE4 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Gm13168-201ENSMUST00000121771 632 ntBASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rpa1Q8VEE4 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms